Tools to scrape publications & their metadata from pubmed, arxiv, medrxiv, biorxiv and chemrxiv.
☆485Feb 24, 2026Updated last week
Alternatives and similar repositories for paperscraper
Users that are interested in paperscraper are comparing it to the libraries listed below
Sorting:
- A web scraping tool to systematically extract the text of scientific papers and corresponding metadata from university accessible journal…☆218Oct 14, 2022Updated 3 years ago
- A proof of concept to scrape papers from journals☆294Jun 4, 2024Updated last year
- A Python tool for local chemical space exploration of any structure based on their 3D geometry☆13Oct 4, 2024Updated last year
- ☆23Nov 10, 2020Updated 5 years ago
- ☆31Nov 15, 2022Updated 3 years ago
- LaTeX/Python code for maintaining my CV; integrates with website code (see rkurchin.github.io repo)☆15Jun 14, 2022Updated 3 years ago
- Use convolutional neural net to detect segment and classify material phases and vessels in chemistry lab and other setting involving mate…☆28Oct 8, 2021Updated 4 years ago
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆146Aug 29, 2025Updated 6 months ago
- A tool for creating Quantitative Structure Property/Activity Relationship (QSPR/QSAR) models.☆87Oct 23, 2025Updated 4 months ago
- PubMed scraper for async search on a list of keywords and concurrent extraction of all found URLs, returning a DataFrame/CSV containing a…☆44Nov 5, 2020Updated 5 years ago
- A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset☆725Jul 31, 2025Updated 7 months ago
- Source code and documentation of a computer assisted synthesis planning (CASP) tool used for the analysis of reaction datasets.☆48Mar 2, 2021Updated 5 years ago
- Python API for Science Parse☆13Mar 27, 2021Updated 4 years ago
- ☆19Aug 4, 2024Updated last year
- The goal of the UDM project is to create and publish an open, extendable and freely available data format for exchange of experimental i…☆21Sep 20, 2021Updated 4 years ago
- PyPaperBot is a Python tool for downloading scientific papers using Google Scholar, Crossref, SciHub, and SciDB.☆607Dec 8, 2024Updated last year
- Molecular Set Representation Learning☆51Jul 16, 2025Updated 7 months ago
- PyMed is a Python library that provides access to PubMed.☆215Dec 7, 2021Updated 4 years ago
- metallocage construction and binding affinity calculations☆16May 30, 2023Updated 2 years ago
- Python wrapper for OSRA. Supports R-Group logic and integration with ChemSchematicResolver☆10Apr 4, 2020Updated 5 years ago
- ☆14Jan 9, 2025Updated last year
- A scraper for bioRxiv☆12Apr 12, 2023Updated 2 years ago
- PyMed is a Python library that provides access to PubMed. This is a user-maintained fork from the archived original.☆17Oct 26, 2025Updated 4 months ago
- Retrieve author and publication information from Google Scholar in a friendly, Pythonic way without having to worry about CAPTCHAs!☆1,789Apr 28, 2025Updated 10 months ago
- Software for evaluating pareto-optimal synthesis pathways☆24Jun 10, 2024Updated last year
- ☆12Mar 16, 2022Updated 3 years ago
- A python package for chemical space visualization.☆151Dec 17, 2024Updated last year
- DECIMER Image Transformer is a deep-learning-based tool designed for automated recognition of chemical structure images. Leveraging trans…☆338Dec 2, 2025Updated 3 months ago
- ☆125Sep 16, 2023Updated 2 years ago
- Graph neural network for predicting NMR chemical shifts☆54May 6, 2022Updated 3 years ago
- A toolkit for automatically extracting semantic information from PDF files of scientific articles☆75Dec 20, 2023Updated 2 years ago
- Jupyter notebooks describing data analysis procedures for my published/submitted papers☆14Jan 16, 2021Updated 5 years ago
- IBM Molecule Generation Experience (MolGX) is a tool to accelerate an AI-driven design of new materials.☆15Oct 26, 2022Updated 3 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- A fully differentiable set autoencoder☆17Apr 3, 2024Updated last year
- High accuracy RAG for answering questions from scientific documents with citations☆8,224Updated this week
- Robust Molecular Structure Recognition with Image-to-Graph Generation☆269Jan 9, 2025Updated last year
- client for Crossref search API☆240Feb 6, 2026Updated 3 weeks ago
- ☆92Jul 11, 2024Updated last year