fvalka / covid19-austria-omicron
Multinomial, quasibinomial and epidemia based models for analyzing the growth of the COVID-19 Omicron (B.1.1.529) variant in Austria
☆7Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for covid19-austria-omicron
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated 6 months ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆18Updated 11 months ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆16Updated last year
- Some code for monkeypox☆10Updated last year
- Code associated with A population-level SEIR model for COVID-19 scenarios (updated) by James P. Gleeson, Thomas Brendan Murphy, Joseph D.…☆10Updated 3 years ago
- An R package for Bayes Linear emulation and history matching.☆16Updated last month
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆10Updated 2 months ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆11Updated 2 years ago
- ☆10Updated last month
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆15Updated 2 months ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- R package for Bayesian nonparametric adaptive smoothing with Stan☆8Updated 4 years ago
- Covid-19 epidemiology - data and analysis☆11Updated 11 months ago
- ☆26Updated 3 years ago
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated last year
- Curated datasets on reported cases of the SARS-CoV-2 Omicron (B.1.1.529) Variant of Concern☆10Updated 2 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated 11 months ago
- ☆15Updated 3 years ago
- Web dashboard to visualize COVID-19 serosurveillance efforts☆11Updated 5 months ago
- Code and data for the manuscript "Optimal, near-optimal, and robust epidemic control"☆11Updated 2 years ago
- Tools for generalized quantile modeling☆14Updated 2 years ago
- Infectious disease model library and utilities☆15Updated 2 years ago
- R package with social contact data for 177 regions (Prem et al. 2017; Prem et al. 2021)☆9Updated this week
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆15Updated 6 months ago
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆19Updated 3 weeks ago
- ☆17Updated 3 years ago
- Repository to the R package nowcaster, nowcasting with INLA☆18Updated 3 weeks ago
- Wastewater Epidemic Model☆14Updated 5 months ago
- Endo A. et al., "Introduction to the particle Markov-chain Monte Carlo." Epidemics, 2019.☆13Updated 2 years ago