Alternatives and similar repositories for flika

Users that are interested in flika are comparing it to the libraries listed below

• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• losonczylab / sima
  Python package for analysis of dynamic fluorescence microscopy data
  ☆103Updated 6 years ago
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated 2 weeks ago
• tferr / Scripts
  Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ
  ☆26Updated 3 years ago
• JaneliaSciComp / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆78Updated last month
• nimwegenLab / MiM_NikonTi
  Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.
  ☆22Updated last year
• hammerlab / flowdec
  TensorFlow Deconvolution for Microscopy Data
  ☆91Updated 3 years ago
• mesoSPIM / mesoSPIM-hardware-documentation
  Hardware documentation for the mesoSPIM microscope project
  ☆34Updated 3 months ago
• paninski-lab / funimag
  Compression, denoising and demixing of functional imaging recordings
  ☆28Updated 7 years ago
• NICALab / SUPPORT
  Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.
  ☆94Updated 4 months ago
• flatironinstitute / NoRMCorre
  Matlab routines for online non-rigid motion correction of calcium imaging data
  ☆153Updated 3 years ago
• mesoSPIM / mesoSPIM-control
  Image acquisition software for mesoSPIM light-sheet microscopes.
  ☆44Updated last week
• bene51 / 3Dscript
  Create 3D/4D animations using a natural language-based syntax
  ☆61Updated 6 months ago
• MicroscPSF / MicroscPSF-Py
  Fast and Accurate 3D PSF Computation for Fluorescence Microscopy
  ☆47Updated last month
• python-microscopy / python-microscopy
  The python-microscopy environment - an open-source package for light microscopy
  ☆93Updated 2 weeks ago
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆71Updated last week
• micro-manager / pycro-manager
  Python control of micro-manager for customized data acquisition
  ☆175Updated 3 months ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆89Updated last week
• mikarubi / voluseg
  pipeline for volumetric cell segmentation
  ☆13Updated last week
• UU-cellbiology / ComDet
  ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)
  ☆19Updated 5 months ago
• radioxoma / micromanager-samples
  Python samples for Micro-Manager: image acquisition and microscope control system
  ☆22Updated 6 years ago
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆53Updated last week
• PRNicovich / 3D-Printed-Optics-Lab-Parts
  Various parts made for fluorescence microscopy + optics work
  ☆16Updated 6 years ago
• swharden / pyABF
  pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files
  ☆112Updated last year
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• hochbaumGroup / HNCcorr
  HNCcorr algorithm for neuron identification in calcium imaging datasets.
  ☆12Updated 2 years ago
• brainglobe / cellfinder
  Automated 3D cell detection in very large images
  ☆222Updated last week
• portugueslab / stytra
  A modular package to control stimulation and track behaviour
  ☆47Updated last year
• pymmcore-plus / useq-schema
  An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.
  ☆20Updated last week
• SWC-Advanced-Microscopy / BakingTray
  Serial-section automated anatomy extension for ScanImage
  ☆17Updated last month