flika-org / flikaLinks
An interactive image processing program for biologists written in Python.
☆24Updated 2 months ago
Alternatives and similar repositories for flika
Users that are interested in flika are comparing it to the libraries listed below
Sorting:
- Python package for analysis of dynamic fluorescence microscopy data☆103Updated 6 years ago
- The python-microscopy environment - an open-source package for light microscopy☆93Updated this week
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 2 weeks ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆70Updated 2 weeks ago
- A modular package to control stimulation and track behaviour☆47Updated last year
- ImgLib2/BDV implementation of Stitching for large datasets☆77Updated 2 weeks ago
- Hardware documentation for the mesoSPIM microscope project☆34Updated 2 months ago
- Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.☆22Updated last year
- Python library for control of microscope devices, supporting hardware triggers and distribution of devices over the network for performan…☆79Updated 3 months ago
- The ImageJ framework for quantification of neuronal anatomy☆52Updated last week
- motion correction☆17Updated 2 years ago
- Create 3D/4D animations using a natural language-based syntax☆61Updated 5 months ago
- Microscope control software☆68Updated 9 months ago
- Python control of micro-manager for customized data acquisition☆174Updated 2 months ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆152Updated 3 years ago
- Tools for distributed alignment of massive images☆89Updated 2 months ago
- ☆20Updated 7 years ago
- ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of mu…☆81Updated 3 weeks ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆54Updated last week
- pipeline for volumetric cell segmentation☆13Updated last month
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆20Updated 2 weeks ago
- ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)☆19Updated 5 months ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆24Updated 7 months ago
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆72Updated 2 weeks ago
- Read ROI files .zip or .roi generated with ImageJ.☆53Updated 3 years ago
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆47Updated 3 weeks ago
- Open-source diode laser combiner, fiber launch, and sequencing controller for fluorescence microscopy☆54Updated 4 years ago
- [DEPREACATED] Python interface for data-driven microscopy with Micro-manager/Micro-Magellan☆14Updated 5 years ago
- 3-D imaging visualisation through slicing☆31Updated 10 months ago