flika-org / flikaLinks
An interactive image processing program for biologists written in Python.
☆23Updated 3 months ago
Alternatives and similar repositories for flika
Users that are interested in flika are comparing it to the libraries listed below
Sorting:
- Python package for analysis of dynamic fluorescence microscopy data☆101Updated 6 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated this week
- motion correction☆17Updated 2 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆151Updated 3 years ago
- TensorFlow Deconvolution for Microscopy Data☆90Updated 3 years ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆66Updated this week
- The python-microscopy environment - an open-source package for light microscopy☆90Updated 2 weeks ago
- A modular package to control stimulation and track behaviour☆46Updated 9 months ago
- Tools for distributed alignment of massive images☆85Updated 2 weeks ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated 2 years ago
- Read ROI files .zip or .roi generated with ImageJ.☆53Updated 3 years ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆47Updated 6 months ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆43Updated last month
- Microscope control software☆68Updated 5 months ago
- The ImageJ framework for quantification of neuronal anatomy☆50Updated this week
- Hardware documentation for the mesoSPIM microscope project☆34Updated 9 months ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- 3-D imaging visualisation through slicing☆30Updated 6 months ago
- pipeline for volumetric cell segmentation☆13Updated last week
- ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of mu…☆77Updated 2 months ago
- Matlab function to import ROIs from ImageJ☆27Updated 5 years ago
- Create 3D/4D animations using a natural language-based syntax☆60Updated 2 months ago
- Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ☆26Updated 3 years ago
- Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.☆22Updated last year
- User-affordable and versatile light-sheet microscopy system for cleared specimens☆24Updated 4 months ago
- ☆34Updated 2 months ago
- CloudReg☆11Updated last year
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆52Updated last week
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago