An interactive image processing program for biologists written in Python.
☆26Mar 4, 2026Updated 2 months ago
Alternatives and similar repositories for flika
Users that are interested in flika are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- pipeline for volumetric cell segmentation☆15Feb 12, 2026Updated 3 months ago
- Various parts made for fluorescence microscopy + optics work☆17Jul 22, 2019Updated 6 years ago
- Optimization of single-cell biophysically detailed models☆15Jul 17, 2020Updated 5 years ago
- PyPGMC: Fast discrete inference submodels for PyMC and PyMC3☆20Jun 7, 2014Updated 11 years ago
- algorithms for registering sequences of images☆14Jul 25, 2016Updated 9 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- OUT-OF-DATE! The new book is at https://bioimagebook.github.io☆21Jan 2, 2017Updated 9 years ago
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆50Apr 9, 2026Updated last month
- A Python module for accessing Hamamatsu DCIMG files☆14Jun 28, 2023Updated 2 years ago
- Implementation of the constrained deconvolution spike inference algorithm in Matlab☆13Dec 20, 2015Updated 10 years ago
- Simple single neuron simulations in Julia☆10May 31, 2019Updated 6 years ago
- Simple demo of structured illumination microscopy image fusion via Richardson-Lucy deconvolution☆24Dec 12, 2017Updated 8 years ago
- An OpenSource LED stimulator for visual and optogenetics stimulation in combination with 2-photon recording☆33Nov 8, 2021Updated 4 years ago
- 'minis' is a software for electrophysiological data analysis. It allows you to detect and analyse spontaneous postsynaptic potetnials/cur…☆12Dec 29, 2024Updated last year
- Labelmaker using SVG templates and CSV data☆10Aug 13, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆12Nov 17, 2018Updated 7 years ago
- Open source smFRET confocal microscope☆11Jul 21, 2021Updated 4 years ago
- Simple syntax highlighting for spice☆11Mar 23, 2019Updated 7 years ago
- A simple MIPI CSI-2 extender with 4-lane support through HDMI cable☆13Mar 3, 2025Updated last year
- 🌋 Keyboard shortcuts for the web.☆25May 13, 2025Updated last year
- Python interface to Optotune focus-tunable lenses☆14Feb 4, 2020Updated 6 years ago
- VEGA: VAE Enhanced by Gene Annotations☆18May 5, 2022Updated 4 years ago
- tipi4icy is a collection of Icy plugins based on TiPi☆11Apr 16, 2026Updated last month
- RNA seq analysis using Bioconductor (analysis built on limma, edgeR)☆12Sep 23, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Needed for NEURON GUI☆12May 14, 2026Updated last week
- Pure Python library for reading NIS Elements ND2 images and metadata☆49Jan 15, 2025Updated last year
- A Graphical User Interface with 3D Visualization features for NEURON simulation enviroment☆30Mar 30, 2026Updated last month
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆11Feb 11, 2023Updated 3 years ago
- Python package for analysis of dynamic fluorescence microscopy data☆103Mar 14, 2019Updated 7 years ago
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Apr 9, 2019Updated 7 years ago
- ☆20Oct 16, 2018Updated 7 years ago
- Fast, modular and reproducible generation of publication quality scientific figures and movies with only a few lines of code.☆17Apr 9, 2025Updated last year
- Sparse and structured methods for supervised and unsupervised learning on large neuroimaging data☆18Jul 13, 2013Updated 12 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Nanotode is a framework for running lightweight simulations of the C. elegans nematode's nervous system.☆16Mar 3, 2019Updated 7 years ago
- Gaussian Process Factor Analysis with Dynamical Structure☆17Nov 3, 2020Updated 5 years ago
- The Light-Field Imaging Toolkit (LFIT) is a collection of MATLAB functions designed to facilitate the rapid processing of raw light field…☆16May 19, 2016Updated 10 years ago
- IN-4 nixie clock☆13Apr 27, 2019Updated 7 years ago
- My reusable additions to OpenSCAD.☆16Jul 18, 2025Updated 10 months ago
- Python bindings for scalar and vectorial models of the 3D microscope point spread function.☆56May 20, 2024Updated 2 years ago
- TensorFlow examples☆23May 10, 2017Updated 9 years ago