flika-org / flika
An interactive image processing program for biologists written in Python.
☆22Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for flika
- pipeline for volumetric cell segmentation☆11Updated this week
- motion correction☆16Updated last year
- Python package for analysis of dynamic fluorescence microscopy data☆100Updated 5 years ago
- Blazing fast calcium imaging analysis toolbox☆23Updated 7 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆45Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆52Updated 4 years ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆37Updated this week
- A Python module for accessing Hamamatsu DCIMG files☆14Updated last year
- Extract regions of interest based on correlated pixel intensity☆23Updated 7 years ago
- Serial-section automated anatomy extension for ScanImage☆12Updated 2 months ago
- Hardware documentation for the mesoSPIM microscope project☆33Updated last month
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆51Updated 6 months ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 6 years ago
- Tools for distributed alignment of massive images☆75Updated last week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆60Updated 2 weeks ago
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆62Updated this week
- Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.☆21Updated 4 months ago
- 8 channel analog output shield for Arduino Uno☆12Updated 3 years ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆15Updated 3 weeks ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆61Updated 3 weeks ago
- ☆17Updated last year
- [DEPREACATED] Python interface for data-driven microscopy with Micro-manager/Micro-Magellan☆14Updated 4 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated 11 months ago
- ☆33Updated 3 years ago
- Microscope control software☆66Updated last year
- Running compute-intense parts of BigStitcher distributed☆20Updated 2 weeks ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆48Updated last week
- A tool for manual pointwise deformable registration using bigdataviewer.☆27Updated last week
- Match suite2p ROIs between imaging sessions☆23Updated 5 years ago
- Pure python/C++ micro-manager ecosystem☆32Updated this week