Alternatives and similar repositories for webin-xml:

Users that are interested in webin-xml are comparing it to the libraries listed below

• elixir-europe / biohackathon-projects-2024
  Project code for BioHackathon Europe 2024.
  ☆21Updated 5 months ago
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆55Updated this week
• galaxyproject / iwc
  Galaxy Workflows maintained by the Intergalactic Workflow Commission
  ☆33Updated this week
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆120Updated last month
• EGA-archive / ega-download-client
  A Python-based EGA download client
  ☆98Updated 7 months ago
• Illumina / interop
  C++ Library to parse Illumina InterOp files
  ☆75Updated last month
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆88Updated 3 weeks ago
• broadinstitute / single_cell_portal
  Tutorials, workflows, and convenience scripts for Single Cell Portal
  ☆50Updated last year
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆86Updated this week
• BD2KGenomics / toil-rnaseq
  UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline
  ☆40Updated 4 years ago
• nextflow-io / nf-prov
  ☆30Updated this week
• HumanCellAtlas / metadata-schema
  This repo is for the metadata schemas associated with the HCA
  ☆67Updated last week
• MaayanLab / biojupies
  Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
  ☆114Updated 5 months ago
• sebriois / biomart
  Python biomart API
  ☆65Updated last year
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆71Updated this week
• usegalaxy-eu / ena-upload-cli
  ENA upload tool - script your Open Data upload to the European Nucleotide Archive
  ☆28Updated 2 weeks ago
• gatk-workflows / seq-format-conversion
  Workflows for converting between sequence data formats
  ☆38Updated 3 years ago
• broadinstitute / cromwell-tools
  A collection of Python clients and accessory scripts for interacting with the Cromwell
  ☆22Updated 2 years ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆43Updated last year
• Boehringer-Ingelheim / dso
  Data Science Operations (dso) command line tool
  ☆31Updated this week
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆74Updated 2 months ago
• imgag / megSAP
  a Medical Genetics Sequence Analysis Pipeline
  ☆82Updated this week
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆55Updated 5 years ago
• abdenlab / oxbow
  Read specialized NGS formats as data frames in R, Python, and more.
  ☆70Updated last week
• basespace / basespace-python-sdk
  BaseSpace Python SDK
  ☆37Updated 3 years ago
• nextflow-io / rnaseq-nf
  A proof of concept of RNAseq pipeline
  ☆77Updated this week
• biothings / myvariant.info
  MyVariant.info: A BioThings API for human variant annotations
  ☆94Updated last week
• clintval / sample-sheet
  Parse Illumina sample sheets with Python
  ☆50Updated last year
• cancervariants / metakb
  Central repository for the VICC metakb web application
  ☆15Updated this week
• ga4gh / va-spec
  An information model for representing variant annotations.
  ☆18Updated this week