Alternatives and similar repositories for multi-atlas-segmentation:

Users that are interested in multi-atlas-segmentation are comparing it to the libraries listed below

• Hierakonpolis / MU-Net
  Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI
  ☆22Updated 3 years ago
• dama-lab / mouse-brain-atlas
  Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo
  ☆23Updated last year
• pnlbwh / dMRIharmonization
  Multi-site dMRI harmonization
  ☆47Updated this week
• KCL-BMEIS / NiftySeg
  ☆27Updated 3 years ago
• CAMRIatUNC / RodentMRISkullStripping
  U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu
  ☆16Updated 3 years ago
• OSIPI / DCE-DSC-MRI_CodeCollection
  TF2.3 DCE-/DSC-MRI processing code, collected, tested and made available to all.
  ☆38Updated last month
• NiftyPET / NiftyPET
  High-throughput Python platform for image reconstruction and analysis
  ☆45Updated 4 months ago
• CCI-Bonn / HD-BET
  Automated deep-learning based brain extraction applicable to a broad range of MRI sequence types and with robust performance even in the …
  ☆34Updated 3 years ago
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆53Updated last week
• npnl / PALS
  Pipeline for Analysing Lesions after Stroke (PALS) is a scalable and user-friendly toolbox designed to facilitate standardised analysis a…
  ☆23Updated 2 weeks ago
• xiangruili / dicm2nii
  DICOM to NIfTI conversion, NIfTI tools
  ☆95Updated 7 months ago
• dmritrekker / trekker
  dMRI based fiber tracking using parallel transport tractography
  ☆26Updated last month
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆66Updated this week
• yeatmanlab / AFQ
  Automated Fiber Quantification
  ☆77Updated last year
• neurolabusc / Clinical
  Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)
  ☆45Updated 3 years ago
• EhsanTadayon / choroid-plexus-segmentation
  Segmentation of Choroid Plexus using Gaussian Mixture Model
  ☆14Updated last week
• NYU-DiffusionMRI / DESIGNER-v1
  Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline
  ☆51Updated last year
• AICONSlab / SynthSegCSVD
  CNN-based segmentation tool for segmenting PVS on T1 and WMH on FLAIR MRI
  ☆12Updated 3 weeks ago
• SlicerDMRI / whitematteranalysis
  White matter tractography clustering and more...
  ☆73Updated 2 weeks ago
• ofgulban / segmentator
  3D MRI data exploration and segmentation tool.
  ☆74Updated last year
• WCHN / CTseg
  Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.
  ☆70Updated 8 months ago
• tanguyduval / imtool3D_td
  3D Image Viewer with ROI tools for Matlab ( NIFTI viewer, Manual segmentation )
  ☆44Updated 7 months ago
• yu02019 / BEN
  ☆27Updated 11 months ago
• hufsaim / pvsseg
  perivascular space segmentation
  ☆14Updated 2 years ago
• pBFSLab / FastCSR
  ☆28Updated last year
• pnlbwh / CNN-Diffusion-MRIBrain-Segmentation
  CNN based brain masking
  ☆16Updated last month
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆50Updated 8 months ago
• npnl / ATLAS
  A space to log issues, updates, and software related to the ATLAS (Anatomical Tracings of Lesions After Stroke) database.
  ☆82Updated 2 years ago
• welcheb / pydcemri
  Python module for processing dynamic contrast enhanced magnetic resonance imaging (DCE-MRI) data
  ☆29Updated 2 years ago
• pboutinaud / SHIVA_PVS
  Perivascular (PVS) or Virchow–Robin Spaces (VRS) segmentation with a 3D Unet
  ☆27Updated 5 months ago