Alternatives and similar repositories for nd2reader

Users that are interested in nd2reader are comparing it to the libraries listed below

• soft-matter / pims_nd2
  Python nd2 reader based on the ND2 SDK
  ☆17Updated 4 years ago
• brentp / slurmpy
  submit jobs to slurm with quick-and-dirty python
  ☆95Updated 3 years ago
• Open-Science-Tools / nd2reader
  Pure Python library for reading NIS Elements ND2 images and metadata
  ☆48Updated last year
• ome / omero-ms-zarr
  Experimental micro-service for implementing the Zarr spec over HTTP
  ☆20Updated 2 weeks ago
• saalfeldlab / n5
  Not HDF5
  ☆195Updated this week
• ilastik / ilastik
  ilastik-shell, applets, and workflows to string them together.
  ☆388Updated this week
• CellProfiler / python-bioformats
  Read and write life sciences file formats
  ☆142Updated 7 months ago
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆221Updated 2 months ago
• blink1073 / tifffile
  Deprecated: Read and write image data from and to TIFF files.
  ☆62Updated 7 years ago
• microscopium / microscopium
  Unsupervised clustering of high content screen samples
  ☆82Updated 2 years ago
• roryk / ipython-cluster-helper
  Tool to easily start up an IPython cluster on different schedulers.
  ☆146Updated 5 years ago
• maweigert / gputools
  GPU accelerated image/volume processing in Python
  ☆113Updated 9 months ago
• fiji / Colocalisation_Analysis
  Fiji's plugin for colocalization analysis
  ☆28Updated 11 months ago
• imagej / imagej-scripting
  ImageJ-specific applications of the SciJava script languages
  ☆27Updated 3 months ago
• aeisenbarth / ngff-writer
  A writer and reader for NGFF OME-Zarr datasets
  ☆14Updated 4 years ago
• guiwitz / microfilm
  Creating figures and animations for multi-channel images with a focus on microscopy.
  ☆79Updated last year
• Jhsmit / PymageJ
  Python tools for ImageJ
  ☆13Updated 4 years ago
• hammerlab / cytokit
  Microscopy Image Cytometry Toolkit
  ☆114Updated 3 years ago
• nicost / micro-manager
  Microscope control and image acquisition integrated with ImageJ.
  ☆16Updated last week
• dask / dask-drmaa
  Deploy Dask on DRMAA clusters
  ☆40Updated 5 years ago
• pyapp-kit / cmap
  Scientific colormaps for python, with only numpy dependency
  ☆159Updated 3 weeks ago
• themantalope / pydendroheatmap
  A tool for generating heatmaps from hierarchically clustered data.
  ☆40Updated 7 years ago
• hms-dbmi / vizarr
  A minimal Zarr image viewer based on Viv.
  ☆180Updated last week
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆152Updated this week
• kjamartens / TARDIS-public
  Public releases of TARDIS
  ☆11Updated 2 years ago
• AndrewGYork / remote_refocus
  A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Rea…
  ☆13Updated last year
• micro-manager / pymmcore
  Python bindings for MMCore, Micro-Manager's device control layer
  ☆35Updated last month
• fiji / SNT
  Legacy project superseded by https://github.com/morphonets/SNT
  ☆13Updated 4 years ago
• constantinpape / z5
  Lightweight C++ and Python interface for datasets in zarr and N5 format
  ☆129Updated 3 weeks ago
• ZhuangLab / storm-analysis
  STORM movie analysis code
  ☆122Updated last year