A Python package and command-line interface for extracting knowledge graphs from text, with a special focus on supporting agents working with scientific hypotheses and experiment design
☆24Jan 13, 2026Updated 8 months ago
Alternatives and similar repositories for llm-text-to-knowledge-graph
Users that are interested in llm-text-to-knowledge-graph are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- Simple analyses and tutorials on the COVID-19 Knowledge Graph☆14Apr 27, 2020Updated 6 years ago
- ☆14Oct 4, 2022Updated 4 years ago
- ☆12Aug 30, 2018Updated 8 years ago
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆14May 16, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Stable diffusion google colab kernel☆11Aug 17, 2022Updated 4 years ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 months ago
- Tool for generating Python AWS Lambda zip files☆10Jul 8, 2019Updated 7 years ago
- Read, create and write cutting data for the Leica LMD6 & LMD7 microscope. Build reproducible workflows to calibrate, import SVG files and…☆16Jul 15, 2026Updated 2 months ago
- Facilitating the use of Deep Visual Proteomics☆18Sep 16, 2026Updated 3 weeks ago
- Space-themed 🚀 Soko-Ban 🎮 clone created in Python using Pyxel.☆17Oct 1, 2026Updated last week
- ☆18Feb 27, 2024Updated 2 years ago
- LipidFinder: A computational workflow for discovery of new lipid molecular species☆22Feb 14, 2021Updated 5 years ago
- Bioconductor package to characterize, analyze and integrate exposome with omic and disease data☆20May 11, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This repository includes the code used in our multiomics BMI study.☆20Jul 6, 2023Updated 3 years ago
- Investigating the role of pre-training dataset size and diversity on the performance of single-cell foundation models☆21May 12, 2026Updated 4 months ago
- Python library for SBGN☆12Updated this week
- ☆28Sep 21, 2023Updated 3 years ago
- A project for exploring differentially active signaling paths related to proteomics datasets☆47Apr 2, 2026Updated 6 months ago
- This repository contains the official implementation of the paper "BioGraphFusion: Graph Knowledge Embedding for Biological Completion an…☆16Nov 5, 2025Updated 11 months ago
- Python package for analyzing and visualizing iModulons☆16Sep 28, 2026Updated last week
- genome annotation (RNAseq and TE) pipeline (draft)☆13Sep 17, 2026Updated 3 weeks ago
- A pipeline to identify gene family using mutiple tools and scripts.☆12Aug 22, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A deep-learning-based multiple toolkits (DeTool) approach that uses the inputs of enzymes and substrates for biocatalystic tasks.☆14Nov 24, 2023Updated 2 years ago
- fulltext-article-downloader is a Python package for programmatically downloading the full text of research articles from their DOIs. It c…☆25Sep 29, 2026Updated last week
- BigSMILES☆11Jun 16, 2024Updated 2 years ago
- VenomPred 2.0 API☆11Jul 7, 2026Updated 3 months ago
- Hugo Multi BootSwatch Theme is a single column theme for [hugo](http://hugo.spf13.com/) based on [Twitter Bootstrap](http://getbootstrap.…☆22Apr 6, 2020Updated 6 years ago
- Python code and jupyter notebooks to accompany the manuscript "Deep learning models for lipid-nanoparticle-based drug delivery"☆14Jul 28, 2020Updated 6 years ago
- A simple and easy-to-use Python wrapper for libCZI - a cross-platform C++ library intended for providing read and write access to CZI doc…☆34Sep 8, 2026Updated last month
- Decoding Single-Cell Omics of Perturbation Responses Using DeSCOPE☆29Sep 21, 2026Updated 2 weeks ago
- R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)☆25Dec 15, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆47Dec 18, 2025Updated 9 months ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆10Aug 28, 2018Updated 8 years ago
- Fast sequence distance estimates☆34Updated this week
- From cryo-EM density map to atomic structure☆41Jun 17, 2026Updated 3 months ago
- Collect and analyze data related to clinical trials of publicly listed biotech and pharmaceutical stocks. This is intended to give a clin…☆13Feb 24, 2020Updated 6 years ago
- ☆14Jan 8, 2025Updated last year
- ☆22Aug 25, 2015Updated 11 years ago