canfkoyuncu / IterativeHMinimaLinks
Iterative H-minima Based Marker-Controlled Watershed for Cell Nucleus Segmentation
☆12Updated 8 years ago
Alternatives and similar repositories for IterativeHMinima
Users that are interested in IterativeHMinima are comparing it to the libraries listed below
Sorting:
- WSICS☆30Updated 6 years ago
- ☆12Updated 4 years ago
- A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.☆80Updated 3 years ago
- This repository contains the code necessary in order to reproduce the work contained in the submitted paper: "Segmentation of Nuclei in H…☆53Updated 6 years ago
- Pan-cancer tils analysis study by Hongming Xu☆14Updated 5 years ago
- ☆21Updated last year
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆127Updated last year
- Learning domain-agnostic visual representation for computational pathology using medically-irrelevant style transfer augmentation☆27Updated 5 years ago
- [MICCAI 2019] Multi-scale Cell Instance Segmentation with Keypoint Graph based Bounding Boxes☆85Updated 6 years ago
- The U-Net Segmentation plugin for Fiji (ImageJ)☆90Updated 3 years ago
- Robust quad-tree based registration on whole slide images☆21Updated 10 months ago
- This is the source code for training and testing our three class CNN algorithm for generalized nuclei segmentation (IEEE TMI paper) using…☆54Updated 6 years ago
- Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering☆111Updated 2 years ago
- Digital Pathology Whole Slide Image Analysis Toolbox☆53Updated 2 years ago
- Analysis of results of the Data Science Bowl 2018☆22Updated 5 years ago
- official implementation of the PatchPerPix instance segmentation method☆35Updated 2 years ago
- Dataset of 9536 H&E-stained patches for colorectal polyps classification and adenomas grading | ICIP21 https://doi.org/10.1109/ICIP42928.…☆34Updated 2 years ago
- Stain normalization parameters used in the paper "F. Ciompi et al., The importance of stain normalization in colorectal tissue classifica…☆28Updated 6 years ago
- This repository contains adaptations of the state-of-the-art deep learning based object detection models for the detection of cell nuclei…☆26Updated 3 years ago
- Dense Steerable Filter CNN☆77Updated 3 years ago
- ☆88Updated 6 years ago
- Weakly Supervised Mitosis Detection in Breast Histopathology Images using Concentric Loss☆25Updated 6 years ago
- Multi-Instance-Learning to check breast cancer. An implementation of Patch-based Convolutional Neural Network for Whole Slide Tissue Imag…☆51Updated 8 years ago
- PyTorch implementation of SPOCO☆32Updated last year
- This library is designed to speed up huge model training on unified memory.☆29Updated 4 years ago
- This repository contains an implementation of a deep learning Mask R-CNN algorithm for nuclei segmentation from whole slide images of tis…☆18Updated 6 years ago
- Rule-Based Thyroid Whole Slide Image Diagnosis☆10Updated 5 years ago
- Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.☆78Updated 3 years ago
- U-net based segmentation of nuclei in microscopy images☆53Updated 7 years ago
- Full package for applying deep learning to virtual slides.☆72Updated 7 years ago