Scoring multiple sequence alignments with Python
☆23Jun 18, 2023Updated 2 years ago
Alternatives and similar repositories for pyMSA
Users that are interested in pyMSA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Solving Multiple Sequence Alignment (MSA) problems with multi-objective metaheuristics☆18Jan 6, 2026Updated 4 months ago
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Dec 4, 2025Updated 5 months ago
- BioBTree v2: An MCP-enabled biomedical graph database unifying 50+ datasets.☆16Apr 25, 2026Updated last week
- A fast multiple sequence alignment program.☆155Apr 17, 2026Updated 2 weeks ago
- PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.☆85Apr 20, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆191Dec 1, 2024Updated last year
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- Optimizing blood-brain barrier permeation through Deep Reinforcement Learning for de novo drug design☆14Apr 22, 2021Updated 5 years ago
- A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence☆114Oct 2, 2025Updated 7 months ago
- ☆20May 28, 2024Updated last year
- Support vector machines implemented from scratch in Python.☆14Sep 16, 2025Updated 7 months ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆38May 21, 2024Updated last year
- An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq☆40Mar 20, 2026Updated last month
- A CRISPR repeat|spacer analysis tool☆20May 7, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides …☆13Feb 25, 2025Updated last year
- Scalable, accurate and sensitive protein group FDRs for large-scale mass spectrometry experiments☆13Mar 25, 2026Updated last month
- ☆17Apr 9, 2026Updated 3 weeks ago
- Formation continue sur la FAIRisation du code informatique☆10Jun 15, 2022Updated 3 years ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆15Jun 10, 2024Updated last year
- Wrapper for the built-in Argparse, allowing missing command-line arguments to be filled in by the user via interactive prompts☆11Jun 19, 2020Updated 5 years ago
- ☆11Apr 25, 2021Updated 5 years ago
- ☆39Feb 19, 2026Updated 2 months ago
- Python Clone of the game "Color Switch"☆10Oct 15, 2018Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆40Updated this week
- Flask app with D3 integration.☆10Feb 27, 2015Updated 11 years ago
- Sliding window dN/dS vs. functional protein domain comparison tool. Given VectorBase gene id inputs it will aggregate various useful Bioi…☆20Dec 10, 2024Updated last year
- Clin.iobio - Workflow and reporting for iobio variant analysis pipeline☆12Oct 7, 2025Updated 6 months ago
- ☆10Jun 28, 2025Updated 10 months ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆13Jun 10, 2022Updated 3 years ago
- VETA - A simple tool do evaluate variant predictors☆11Jun 17, 2024Updated last year
- ☆14Jan 7, 2026Updated 3 months ago
- This is a basic Redis Rate Limiting demo written in NodeJS☆13Jun 27, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Output API docs to Markdown using Griffe.☆18Mar 12, 2026Updated last month
- ☆12Jun 13, 2024Updated last year
- Plotly BioVisualization 🎯 Interactive Needle and Manhattan Plots & Alignment Viewer☆11Feb 28, 2020Updated 6 years ago
- Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…☆278Apr 20, 2026Updated 2 weeks ago
- ☆12May 16, 2020Updated 5 years ago
- Compute a 2D embedding of a data matrix given supervised class information.☆12Dec 8, 2019Updated 6 years ago
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Oct 25, 2021Updated 4 years ago