benhid / pyMSALinks
Scoring multiple sequence alignments with Python
☆23Updated last year
Alternatives and similar repositories for pyMSA
Users that are interested in pyMSA are comparing it to the libraries listed below
Sorting:
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 4 years ago
- Codon usage tables in code-friendly format + Python bindings☆37Updated 3 weeks ago
- Solving Multiple Sequence Alignment (MSA) problems with multi-objective metaheuristics☆18Updated 5 years ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆31Updated 3 months ago
- Transmembrane proteins predicted through Language Model embeddings☆36Updated 3 weeks ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆45Updated this week
- Deep learning embedding for nucleotide sequences☆18Updated 2 months ago
- A Python wrapper around Clustal Omega (http://www.clustal.org/omega/)☆24Updated 3 years ago
- PSIPRED Protein Secondary Structure Predictor☆55Updated 6 months ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 8 years ago
- Protein Sequence Annotation with Language Models☆20Updated last week
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- a pipeline to build similarity maps of protein space☆34Updated 5 months ago
- Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.☆21Updated last year
- A PCR primer tool for DNA assembly flows☆32Updated last year
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆32Updated last year
- Tool for deep mutational scanning experiments.☆51Updated 2 months ago
- TISIGNER: Unleash the power of synthetic biology☆23Updated 2 weeks ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆29Updated last year
- Python framework for doing ancestral sequence reconstruction☆38Updated 11 months ago
- Python package and command line tool for epitope prediction☆51Updated 10 months ago
- software for the analysis and visualization of deep mutational scanning data☆34Updated 2 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆38Updated 5 months ago
- Multi-Species Codon Optimization Engine☆27Updated last year
- DSSPparser is an easy tool to parse dssp file, and can transform PDB format file to dssp format file by xssp,also support the tansfrom be…☆13Updated 2 years ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆130Updated 6 months ago
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆25Updated last month
- Source code for MutPred2.0☆13Updated 2 months ago