Alternatives and similar repositories for OSS-lect:

Users that are interested in OSS-lect are comparing it to the libraries listed below

• JunKimCNU / JunKimLabTutorial
  충남대학교 김준 연구실 튜토리얼
  ☆36Updated 2 months ago
• anw-sh / silva-138_classifiers
  Classifiers trained on commonly used variable regions of Prokaryotic 16S rRNA genes
  ☆13Updated 9 months ago
• adlape95 / Spaghetti
  Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing
  ☆16Updated 8 months ago
• colinbrislawn / unite-train
  🍄 Qiime2 ITS classifiers for the UNITE database
  ☆37Updated last week
• Finn-Lab / MAG_Snakemake_wf
  Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
  ☆59Updated 3 years ago
• Saskia-Oosterbroek / decona
  fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads
  ☆46Updated 8 months ago
• DeniRibicic / q2ONT
  Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2
  ☆29Updated 5 years ago
• treangenlab / emu
  ☆48Updated last month
• MaestSi / MetONTIIME
  A Meta-barcoding pipeline for analysing ONT data in QIIME2 framework
  ☆96Updated last week
• nearinj / Comparison_of_DA_microbiome_methods
  ☆55Updated last year
• benjjneb / LRASManuscript
  Reproducible Analyses accompanying DADA2 + PacBio Manuscript
  ☆33Updated 4 years ago
• qichao1984 / NCyc
  ☆48Updated 4 years ago
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆71Updated last month
• gtonkinhill / panstripe
  post processing of bacterial pangenome gene presence/absence matrices
  ☆59Updated last month
• mdsufz / MuDoGeR
  MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
  ☆88Updated 7 months ago
• GiantSpaceRobot / FindFungi
  A pipeline for the identification of fungi in public metagenomics datasets
  ☆16Updated 4 years ago
• MaestSi / ONTrack
  A MinION-based pipeline for tracking species biodiversity
  ☆13Updated last year
• WatsonLab / MAGpy
  Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)
  ☆62Updated 2 years ago
• avierstr / amplicon_sorter
  Sorts amplicons from Nanopore sequencing data based on similarity
  ☆35Updated 2 weeks ago
• dalmolingroup / euryale
  A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA
  ☆13Updated 3 weeks ago
• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆29Updated 8 months ago
• pr2database / pr2database
  Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
  ☆80Updated last week
• BikLab / BITMaB2-Tutorials
  Workshop materials for the Second Benthic Invertebrates, Metagenomics, and Bioinformatics Workshop at the TAMUCC Harte Institute in Corpu…
  ☆22Updated 7 years ago
• geronimp / graftM
  GraftM - Rapid community profiles from metagenomes
  ☆45Updated 8 months ago
• ksahlin / NGSpeciesID
  Reference-free clustering and consensus forming of long-read amplicon sequencing
  ☆55Updated 3 months ago
• HRGV / phyloFlash
  phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
  ☆83Updated last year
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆93Updated 6 months ago
• faircloth-lab / protocols
  Our laboratory repository
  ☆11Updated 4 years ago
• hyeshik / poreplex
  A versatile sequenced read processor for nanopore direct RNA sequencing
  ☆79Updated 4 years ago
• Gibbons-Lab / isb_course_2021
  Materials and presentations for the 2021 ISB Virtual Microbiome Series.
  ☆25Updated 2 years ago