MR-link and genome integration. genome_integration is a repository for the analysis of genomic data. Specifically, the repository implements the causal inference method MR-link, as well as other Mendelian randomization methods.
☆11Jul 8, 2022Updated 3 years ago
Alternatives and similar repositories for genome_integration
Users that are interested in genome_integration are comparing it to the libraries listed below
Sorting:
- https://jinghuazhao.github.io/pQTLtools/☆23Mar 25, 2025Updated 11 months ago
- Assessing enrichment of complex disease or trait associations among QTLs☆15Jun 15, 2020Updated 5 years ago
- Analysis code for Olink CVD1 - HF analysis☆15Aug 14, 2024Updated last year
- ☆11Mar 16, 2022Updated 3 years ago
- EXpression PREdiction with Summary Statistics Only☆13Dec 10, 2025Updated 2 months ago
- ☆10May 22, 2019Updated 6 years ago
- a deep generative model for single-cell survival analysis☆16Dec 2, 2025Updated 3 months ago
- Code to run Mendelian Randomization Analysis☆10Mar 14, 2022Updated 3 years ago
- cEll tyPe enrIChment☆16Dec 11, 2022Updated 3 years ago
- This code relates to the project titled "Assessing the causal role of epigenetic clocks in the development of multiple cancers: a Mendeli…☆14Nov 22, 2021Updated 4 years ago
- ☆14May 25, 2018Updated 7 years ago
- ☆13Jul 4, 2023Updated 2 years ago
- ☆22Apr 28, 2022Updated 3 years ago
- ☆36Apr 2, 2025Updated 11 months ago
- An R package for generating comparative regional association plots☆18Sep 30, 2025Updated 5 months ago
- ☆17Sep 17, 2019Updated 6 years ago
- A package for MR Practical Sessions☆20Apr 15, 2020Updated 5 years ago
- Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper☆18Dec 25, 2023Updated 2 years ago
- This repository contains scripts related to Surendran P, Stewart I et al. Nature Medicine 2022 "Rare and common genetic causes of chemica…☆18Jul 15, 2022Updated 3 years ago
- Pan cancer summary statistics from meta analyses of UK Biobank and Kaiser GERA cohorts.☆17Jul 15, 2020Updated 5 years ago
- MR-link-2: pleiotropy robust cis MR☆21Aug 4, 2025Updated 7 months ago
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆18Jul 14, 2023Updated 2 years ago
- An R package for phenotype generation and association testing for phenome wide associations studies (PheWAS)☆15Jul 11, 2024Updated last year
- Type 2 diabetes and dementia in the Health and Retirement Study: A Mendelian randomization approach☆16Feb 23, 2023Updated 3 years ago
- ☆23May 11, 2023Updated 2 years ago
- ☆21Aug 20, 2024Updated last year
- SCALLOP-INF analysis☆20Oct 24, 2025Updated 4 months ago
- Connecting GWAS summary data to analytical tools☆23Mar 25, 2024Updated last year
- ☆21Nov 15, 2024Updated last year
- Mendelian Randomization Bayesian Model Averaging☆22Feb 21, 2023Updated 3 years ago
- Regional association plots☆24Apr 1, 2024Updated last year
- Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.☆26Nov 18, 2023Updated 2 years ago
- Network representation of LDSC results☆31Mar 16, 2022Updated 3 years ago
- ☆26Dec 1, 2020Updated 5 years ago
- LDlinkR☆64Apr 17, 2024Updated last year
- A collection of commonly used resources for complex trait genetics.☆37Feb 10, 2026Updated 3 weeks ago
- lhcMR☆26Mar 24, 2024Updated last year
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Sep 20, 2022Updated 3 years ago
- Regional association plots☆26Apr 1, 2024Updated last year