Viroid Nominator (VNom): reference free tool for nominating viroid-like de novo assembled contigs
☆19Jan 21, 2024Updated 2 years ago
Alternatives and similar repositories for VNom
Users that are interested in VNom are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genomic Tech's COVID sequencing☆10Mar 16, 2021Updated 5 years ago
- Case-control matching for microbiome data☆10Aug 8, 2023Updated 3 years ago
- ☆27Jun 20, 2023Updated 3 years ago
- DTU analysis tool inspired by llamas☆12Aug 19, 2026Updated 2 months ago
- Pipeline which removes human DNA from microbial shotgun samples.☆16Aug 25, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Snakemake workflow for comparison of differential abundance ranks☆13Mar 22, 2024Updated 2 years ago
- ☆10Feb 25, 2026Updated 8 months ago
- new codebase of the PaPaRa algorithm☆10Sep 9, 2016Updated 10 years ago
- Simple R utilities for working with HMMER☆19Oct 3, 2024Updated 2 years ago
- Fungal genome assembly and annotation from Illumina short reads, ONT or PacBio HiFi long reads, a hybrid of short and long reads, or an e…☆16Nov 4, 2026Updated last week
- RangeShiftR-package with new structure using subtree for RS core files☆11Updated this week
- R scripts that help to perform common analyses in niche modeling exercises☆12Sep 28, 2022Updated 4 years ago
- A tool for identifying phylogenetic marker genes in Nucleocytoviricota (giant viruses) and generating concatenated alignments.☆13Feb 17, 2024Updated 2 years ago
- ☆58May 5, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆25Feb 28, 2023Updated 3 years ago
- This repository contains training material developed by the Microbial Ecology Group to introduce researchers to the R programming languag…☆12Aug 9, 2021Updated 5 years ago
- Snakemake workflow for bacterial whole-genome sequencing: assembly, QC, taxonomy, annotation, AMR and virulence, plasmids and prophages —…☆13Oct 28, 2026Updated 2 weeks ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆108Oct 19, 2026Updated 3 weeks ago
- ☆12Feb 26, 2019Updated 7 years ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated 2 years ago
- Repository for Bioinformatics scripts and basic programs developed by L.M.C☆10Jun 2, 2023Updated 3 years ago
- A Snakemake-workflow to sample taxa from sequence databases based on taxonomical or phylogenetic information☆10Jan 19, 2025Updated last year
- Markdown version of Cytoscape manual☆12Sep 30, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Identify the sequence context flanking SNPs of interest and screen for potential profiles/signatures of interest☆10May 3, 2024Updated 2 years ago
- Genome size estimation from long read overlaps☆98Sep 8, 2026Updated 2 months ago
- symbiont classifier☆25Sep 21, 2026Updated last month
- R Shiny tool to interactively visualize and analyze antibody repertoires☆11Jan 8, 2024Updated 2 years ago
- Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences☆16Aug 6, 2026Updated 3 months ago
- All The Bacteria CLI — query 3.2M bacterial genomes (AMR, MLST, assemblies, metadata) from the terminal☆37Sep 2, 2026Updated 2 months ago
- a pipeline to cluster proteins into families☆10Apr 1, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results☆11Updated this week
- drawing RNA secondary structure with style; instantly☆10Nov 22, 2025Updated 11 months ago
- ☆28Aug 2, 2023Updated 3 years ago
- geNomad: Identification of mobile genetic elements☆344Oct 14, 2026Updated last month
- Query sequence database by HMMs arranged in predefined synteny structure☆21Jun 23, 2026Updated 4 months ago
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 6 years ago
- Magic gene-neighborhood analyses☆15Nov 7, 2026Updated last week
Are these results useful?