Zheludev / VNomLinks
Viroid Nominator (VNom): reference free tool for nominating viroid-like de novo assembled contigs
☆18Updated 2 years ago
Alternatives and similar repositories for VNom
Users that are interested in VNom are comparing it to the libraries listed below
Sorting:
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- Reorients assembled microbial sequences☆132Updated 5 months ago
- IS mapping software☆57Updated 4 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆103Updated 2 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆81Updated 9 months ago
- Convert GTDB taxonomy to NCBI taxdump format☆74Updated 2 years ago
- Precise host read removal☆115Updated 5 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆235Updated 4 months ago
- (Meta-)genome screening for functional and natural product gene sequences☆101Updated last week
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆104Updated 2 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆57Updated 9 months ago
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆67Updated 11 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆130Updated this week
- Interactive quality assessment of genome assemblies☆118Updated last week
- Bioinformatics Tools☆90Updated last week
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆149Updated 4 months ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆99Updated this week
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆81Updated 2 years ago
- ☆84Updated 2 years ago
- Pan-genome inference and genotyping with long noisy or short accurate reads☆119Updated last year
- ☆81Updated 2 months ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆49Updated 3 years ago
- ☆79Updated this week
- Prediction of prophages from bacterial genomes☆81Updated last week
- ARG normalization by mapping to the ARO ontology.☆62Updated 6 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Updated last year
- DDBJ Fast Annotation and Submission Tool☆84Updated last week
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆97Updated 8 months ago
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆47Updated 5 months ago