Alternatives and similar repositories for BNMTF:

Users that are interested in BNMTF are comparing it to the libraries listed below

• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆59Updated 4 years ago
• KrishnaswamyLab / graphtools
  Tools for building and manipulating graphs in Python
  ☆41Updated 2 years ago
• acopar / fast-nmtf
  Fast methods for non-negative matrix tri-factorization
  ☆15Updated 5 years ago
• ManchesterBioinference / BranchedGP
  Branching Gaussian process
  ☆28Updated last year
• mstrazar / iONMF
  Integrative orthogonal non-negative matrix factorization
  ☆31Updated 5 years ago
• NikolayOskolkov / HowUMAPWorks
  Here I explain the math behind UMAP and show how to program it from scratch in Python
  ☆38Updated 4 years ago
• lilab-bcb / nmf-torch
  ☆10Updated 3 years ago
• lujonathanh / BETS
  Bootstrap Elastic net regression from Time Series is a vector-autoregressive approach to causal inference from gene expression time serie…
  ☆18Updated 2 years ago
• SheffieldML / GPclust
  Collapsed Variational Bayes
  ☆70Updated 5 years ago
• eugenelin1 / DRA
  ☆16Updated 4 years ago
• ppsp-team / StratiPy
  Graph regularized nonnegative matrix factorization (GNMF) in Python
  ☆45Updated 5 years ago
• andrewcharlesjones / cplvm
  Contrastive Poisson latent variable models (CPLVMs)
  ☆11Updated 3 years ago
• NikolayOskolkov / tSNE_vs_UMAP_GlobalStructure
  Here we address the global structure preservation by tSNE and UMAP
  ☆48Updated 5 years ago
• davisidarta / fastlapmap
  Fast Laplacian Eigenmaps: lightweight multicore LE for non-linear dimensional reduction with minimal memory usage. Outperforms sklearn's …
  ☆23Updated 3 years ago
• RabadanLab / randomly
  A Library for Denoising Single-Cell Data with Random Matrix Theory
  ☆37Updated last year
• ChrisSchinnerl / pymf3
  Python Matrix Factorization Module
  ☆14Updated 8 years ago
• mims-harvard / fusenet
  Network inference by fusing data from diverse distributions
  ☆14Updated 8 years ago
• quadbio / latent-lego
  Latent spaces for single cells
  ☆21Updated last year
• ntamas / netctrl
  Controllability models of complex networks
  ☆27Updated last year
• yangzi4 / iNMF
  Source code for integrative nonnegative matrix factorization
  ☆18Updated 6 years ago
• glennq / tga
  Implementation of Trimmed Grassmann Average (TGA) by Hauberg S et al. in Python
  ☆23Updated 9 years ago
• redst4r / pyDiffusionMaps
  Diffusion maps for python
  ☆12Updated 4 years ago
• KrishnaswamyLab / AAnet
  Archetypal Analysis network (AAnet)
  ☆31Updated 2 months ago
• jmbr / diffusion-maps
  Fast computation of diffusion maps and geometric harmonics in Python. Moved to https://git.sr.ht/~jmbr/diffusion-maps
  ☆41Updated 3 years ago
• tare / Splotch
  Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data
  ☆19Updated 2 weeks ago
• duvenaud / additive-gps
  Source for experiments in the Additive Gaussian process paper, as well as extensions relating to dropout.
  ☆21Updated 11 years ago
• vandijklab / scGAT
  Code to reproduce results in Ravindra NG* & Sehanobish A* et al. 2020, "Disease State Prediction From Single-Cell Data Using Graph Attent…
  ☆16Updated 4 years ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆38Updated 2 years ago
• bdwilliamson / vimpy
  Perform inference on algorithm-agnostic variable importance in Python
  ☆20Updated 2 years ago
• andrewcharlesjones / pcpca
  Probabilistic contrastive principal component analysis (PCPCA)
  ☆24Updated 3 years ago