Subset of AmberTools, with updates and modifications
☆16Apr 22, 2026Updated 2 weeks ago
Alternatives and similar repositories for AmberClassic
Users that are interested in AmberClassic are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A stripped-down set of just antechamber, sqm, and tleap.☆34Sep 20, 2021Updated 4 years ago
- A quick tutorial for modern materials science, should the reader be not familiar with it and just wishing to crack the data☆16Aug 24, 2025Updated 8 months ago
- Grace (xmgrace) plotting tool☆14May 25, 2017Updated 8 years ago
- Misc. FPGA Projects☆15Apr 29, 2026Updated last week
- Compare molecular structures after energy minimization in various force fields.☆10Aug 22, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15Apr 7, 2022Updated 4 years ago
- Tool to compute bond and angle force field parameters with the Seminario method☆14Apr 15, 2018Updated 8 years ago
- FFTFPGA is an OpenCL based library for Fast Fourier Transformations for FPGAs. This repository provides OpenCL host code in the form of F…☆16Mar 31, 2022Updated 4 years ago
- GNEprop is a graph neural network-based model to predict antibacterial activity from molecular structures in virtual screening settings.☆45Apr 8, 2026Updated 3 weeks ago
- code and source data for de novo design of Kemp elimination paper☆25Sep 18, 2025Updated 7 months ago
- A manually curated lists of software, publications and other resources related to the analysis of HDX-MS data.☆11Dec 15, 2025Updated 4 months ago
- Wallace and Dadda tree multiplier generator in vhdl and verilog☆13Mar 14, 2026Updated last month
- QRNAS: Quick Refinement of Nucleic Acid Structures☆18Apr 30, 2025Updated last year
- This script makes a cyclic peptide or cyclic nucleotide topology file for GROMACS out of (specially prepared) linear molecule topology fi…☆15Nov 24, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Blazingly fast, modern C++ API using coroutines for efficient RTL verification and co-simulation via the VPI interface☆17Mar 10, 2026Updated last month
- An open source cross-platform software for the computation of in solution and precipitation chemical equilibria☆15Apr 16, 2026Updated 2 weeks ago
- BMRB data visualization tools using python Plotly☆15Aug 21, 2025Updated 8 months ago
- Deep Neural Networks for Analysing NMR time domain data☆13Sep 26, 2024Updated last year
- ☆32Apr 28, 2026Updated last week
- ✏️ A web app for visualising hypotrochoids and epitrochoids.☆17Sep 25, 2018Updated 7 years ago
- The standalone version / cli-tool of SPOT-Contact-Single available for public use for research purposes.☆16Feb 1, 2024Updated 2 years ago
- Шаблон презентации для квалификационных работ☆26Jun 24, 2024Updated last year
- Python wrapper for pgapack, the parallel genetic algorithm library☆18Jul 16, 2025Updated 9 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- UCBShift is a program for predicting chemical shifts for backbone atoms and β-carbon of a protein in solution. It utilizes a machine lear…☆26Apr 9, 2026Updated 3 weeks ago
- Why debate R vs python, when you can convert R to python?☆16Apr 24, 2020Updated 6 years ago
- ☆50Sep 5, 2024Updated last year
- A Python plugin for using Ocean with Amazon Braket☆22Sep 26, 2023Updated 2 years ago
- ☆22Updated this week
- HDXer is a package to compute Hydrogen-Deuterium exchange data from biomolecular simulations, compare to experiment, and perform ensemble…☆21Apr 17, 2023Updated 3 years ago
- Python version of the modified Seminario method code☆17Nov 15, 2020Updated 5 years ago
- A prototype an algorithm to calibrate the CBCT geometry☆24Nov 13, 2025Updated 5 months ago
- A programming language for Singaporeans, by not a Singaporean yet. Can one lah!☆82Apr 25, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An Online Tool for the Real-Time Kinetic Analysis of Binding Events☆14Jul 13, 2025Updated 9 months ago
- Quantum to Molecular Mechanics (Q2MM)☆26Apr 29, 2026Updated last week
- A collection of tools for DNA modelling☆24Apr 9, 2026Updated 3 weeks ago
- ☆17Sep 4, 2022Updated 3 years ago
- Python script that receives a molecular dynamics or Monte Carlo trajectory and performs agglomerative clustering to classify similar stru…☆29Nov 1, 2025Updated 6 months ago
- Quantum to Molecular Mechanics (Q2MM)☆25Apr 20, 2026Updated 2 weeks ago
- A Tutorial for quasi Markov State Model(qMSM) developed by Huang Group, Dept of Chemistry at UW-Madison☆19Jun 6, 2023Updated 2 years ago