Sage-Bionetworks / synapserLinks
An R package providing programmatic access to Synapse
☆37Updated 3 months ago
Alternatives and similar repositories for synapser
Users that are interested in synapser are comparing it to the libraries listed below
Sorting:
- MSigDB gene sets for multiple organisms in a tidy data format☆83Updated 4 months ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆68Updated 3 weeks ago
- Bioconductor package for management of multi-assay data☆72Updated this week
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆37Updated 2 years ago
- Explore design matrices interactively with R/Shiny☆38Updated 3 weeks ago
- Brings SingleCellExperiment objects to the tidyverse☆36Updated last week
- Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail☆79Updated last month
- LDlinkR☆62Updated last year
- An R package for multivariate adaptive shrinkage.☆92Updated last year
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Updated 5 years ago
- Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment☆33Updated 2 weeks ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 11 months ago
- An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…☆111Updated last month
- The START App: R Shiny Transcriptome Analysis Resource Tool☆88Updated 5 years ago
- Bioconductor facilities for parallel evaluation☆68Updated 3 weeks ago
- Clone of the Bioconductor repository for the basilisk package.☆29Updated 2 weeks ago
- A General Framework for Consensus Partitioning☆63Updated 9 months ago
- Devel repository for minfi☆62Updated last year
- Visualise correlation results and test significancies of these☆23Updated 5 years ago
- Identify and correct invalid gene symbols☆60Updated last year
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated 2 months ago
- Functional enrichment analysis of high-throughput omics data☆20Updated 10 months ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 2 months ago
- An introduction to matrix factorization and PCA and SVD.☆41Updated 2 years ago
- A container (S4 class) for matrix-like assays☆36Updated 3 weeks ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- Download, integration and visualizations of the variety & volume of TCGA data.☆51Updated 3 years ago
- Project Website:☆54Updated 5 months ago