Alternatives and similar repositories for UMLS-EDA

Users that are interested in UMLS-EDA are comparing it to the libraries listed below

• usmaann / BioALBERT
  Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT
  ☆29Updated 3 years ago
• uf-hobi-informatics-lab / SDoH_SODA
  ☆18Updated last year
• gmichalo / UmlsBERT
  ☆98Updated 3 years ago
• cthoyt / umls_downloader
  Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
  ☆40Updated last year
• Tian312 / PICO_Parser
  A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework
  ☆45Updated 4 years ago
• beamandrew / cui2vec
  ☆55Updated 5 years ago
• acadTags / Rare-disease-identification
  Rare disease identification from free-text clinical notes with ontologies and weak supervision
  ☆31Updated 2 years ago
• GanjinZero / CODER
  CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]
  ☆78Updated 2 years ago
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆60Updated 11 months ago
• dhchenx / umls-similarity
  Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)
  ☆16Updated 3 years ago
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆32Updated last year
• Aitslab / BioNLP
  Repository for student projects within biomedical text mining from Lund University
  ☆54Updated last year
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆25Updated 3 years ago
• sg-wbi / belb
  Biomedical Entity Linking Benchmark
  ☆13Updated 5 months ago
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆44Updated this week
• Tian312 / EliIE
  An information extraction system for free-text eligibility criteria
  ☆37Updated 6 years ago
• cambridgeltl / cometa
  Corpus of Online Medical EnTities: the cometA corpus
  ☆50Updated 2 months ago
• jind11 / PubMed-PICO-Detection
  PubMed PICO Element Detection Dataset
  ☆56Updated 6 years ago
• uf-hobi-informatics-lab / NLPreprocessing
  A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
  ☆31Updated 11 months ago
• suamin / MIL-RBERT
  MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)
  ☆19Updated last year
• r-mal / umls-embeddings
  Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System
  ☆39Updated 5 years ago
• lasigeBioTM / BiOnt
  BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction
  ☆26Updated last year
• LHNCBC / SemRep
  ☆67Updated 2 years ago
• blpercha / umls-to-graph
  Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.
  ☆41Updated 4 years ago
• Yale-LILY / Ascle
  A Python Natural Language Processing Toolkit for Medical Text Generation
  ☆79Updated last week
• som-shahlab / trove
  Weakly supervised medical named entity classification
  ☆73Updated 2 years ago
• ncbi-nlp / BioWordVec
  ☆152Updated last year
• rcolinp / clinical_informatics_umls
  An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…
  ☆43Updated last year
• Melbourne-BMDS / mimic34md2020_materials
  ☆22Updated 2 years ago
• uf-hobi-informatics-lab / ClinicalTransformerNER
  a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms
  ☆147Updated last year