Alternatives and similar repositories for UMLS-EDA

Users that are interested in UMLS-EDA are comparing it to the libraries listed below

• cthoyt / umls_downloader
  Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
  ☆40Updated last year
• beamandrew / cui2vec
  ☆55Updated 5 years ago
• uf-hobi-informatics-lab / SDoH_SODA
  ☆18Updated last year
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆32Updated 2 years ago
• gmichalo / UmlsBERT
  ☆99Updated 3 years ago
• OHNLP / MedTator
  A Serverless Text Annotation Tool for Corpus Development
  ☆57Updated 7 months ago
• dhchenx / umls-similarity
  Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)
  ☆16Updated 3 years ago
• Tian312 / EliIE
  An information extraction system for free-text eligibility criteria
  ☆38Updated 6 years ago
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆26Updated 3 years ago
• kdpsingh / clinspacy
  Clinical Natural Language Processing using spaCy, scispacy, and medspacy
  ☆100Updated last year
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆69Updated 4 months ago
• LHNCBC / SemRep
  ☆70Updated 3 years ago
• ncbi-nlp / BioWordVec
  ☆152Updated last year
• blpercha / umls-to-graph
  Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.
  ☆41Updated 5 years ago
• clinicalml / prancer
  Platform enabling Rapid Annotation for Clinical Entity Recognition
  ☆49Updated 3 years ago
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆45Updated 2 months ago
• Aitslab / BioNLP
  Repository for student projects within biomedical text mining from Lund University
  ☆55Updated 2 years ago
• babylonhealth / medisim
  Medical Similarity Dataset creation from SNOMED
  ☆28Updated 3 years ago
• usmaann / BioALBERT
  Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT
  ☆29Updated 4 years ago
• OHDSI / Criteria2Query
  [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…
  ☆70Updated last week
• som-shahlab / trove
  Weakly supervised medical named entity classification
  ☆73Updated 2 years ago
• acadTags / Rare-disease-identification
  Rare disease identification from free-text clinical notes with ontologies and weak supervision
  ☆32Updated 2 years ago
• Tian312 / PICO_Parser
  A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework
  ☆46Updated 4 years ago
• ncbi-nlp / TeamTat
  Text annotation tool for team collaboration
  ☆42Updated last year
• uf-hobi-informatics-lab / ClinicalTransformerNER
  a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms
  ☆152Updated 2 years ago
• nlpie / biomedicus
  BioMedICUS: A biomedical and clinical NLP engine.
  ☆19Updated this week
• CogStack / MedCATtrainer
  A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.
  ☆85Updated 2 weeks ago
• OHDSI / PheValuator
  An R package for evaluating phenotype algorithms.
  ☆21Updated last month
• jayded / evidence-inference
  Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…
  ☆64Updated 4 years ago
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆61Updated 2 months ago