Alternatives and similar repositories for UMLS-EDA

Users that are interested in UMLS-EDA are comparing it to the libraries listed below

• cthoyt / umls_downloader
  Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
  ☆41Updated last year
• dhchenx / umls-similarity
  Estimate similarity of medical concepts based on Unified Medical Language System (UMLS)
  ☆16Updated 4 years ago
• beamandrew / cui2vec
  ☆55Updated 5 years ago
• gmichalo / UmlsBERT
  ☆101Updated 3 years ago
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆71Updated 9 months ago
• uf-hobi-informatics-lab / SDoH_SODA
  ☆18Updated last year
• rcolinp / clinical_informatics_umls
  An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being…
  ☆48Updated last year
• luozhhub / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆27Updated 4 years ago
• GanjinZero / CODER
  CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]
  ☆80Updated 3 years ago
• LHNCBC / SemRep
  ☆70Updated 3 years ago
• clinicalml / prancer
  Platform enabling Rapid Annotation for Clinical Entity Recognition
  ☆49Updated 3 years ago
• OHNLP / MedTator
  A Serverless Text Annotation Tool for Corpus Development
  ☆57Updated 11 months ago
• som-shahlab / trove
  Weakly supervised medical named entity classification
  ☆72Updated 3 years ago
• gyorilab / gilda
  Grounding of biomedical named entities with contextual disambiguation
  ☆47Updated 3 weeks ago
• kdpsingh / clinspacy
  Clinical Natural Language Processing using spaCy, scispacy, and medspacy
  ☆101Updated last year
• nlpie / biomedicus
  BioMedICUS: A biomedical and clinical NLP engine.
  ☆20Updated 3 months ago
• Aitslab / BioNLP
  Repository for student projects within biomedical text mining from Lund University
  ☆57Updated 2 years ago
• OHDSI / ClinicalTrialsWGETL
  [under development] ETL materials to support proposal for CDM enhancements for clinical trial data
  ☆24Updated 4 years ago
• usmaann / BioALBERT
  Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT
  ☆29Updated 4 years ago
• bionlplab / bioc
  Data structures and code to read/write BioC XML and Json.
  ☆33Updated 2 years ago
• Tian312 / EliIE
  An information extraction system for free-text eligibility criteria
  ☆38Updated 7 years ago
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆63Updated last week
• acadTags / Rare-disease-identification
  Rare disease identification from free-text clinical notes with ontologies and weak supervision
  ☆32Updated 2 years ago
• uf-hobi-informatics-lab / NLPreprocessing
  A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
  ☆32Updated last year
• lisavirginia / clinical-abbreviations
  ☆66Updated 4 years ago
• cambridgeltl / sapbert
  [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.
  ☆213Updated 2 years ago
• hibaahsan / MIMIC-SBDH
  Dataset containing 7,025 discharge summary notes from the MIMIC III dataset annotated for 7 SBDHs
  ☆18Updated 3 years ago
• qingyu-qc / gpt_bionlp_benchmark
  ☆25Updated 2 years ago
• DeepPhe / DeepPhe-Release
  Public release of the DeepPhe analytic software
  ☆30Updated 2 months ago
• thepanacealab / OHDSIananke
  OHDSI Ananke - A Tool for Mapping Between OHDSI Concept Identifiers to Unified Medical Language System (UMLS) identifiers
  ☆15Updated 5 years ago