Create "Table 1" for research papers in Python
☆197Feb 10, 2026Updated 7 months ago
Alternatives and similar repositories for tableone
Users that are interested in tableone are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python package for removing duplicate text in clinical notes or other documents☆39Aug 6, 2020Updated 6 years ago
- R package to create "Table 1", description of baseline characteristics with or without propensity score weighting☆236Mar 5, 2026Updated 6 months ago
- Tools for working with icd codes and comorbidities☆26Apr 28, 2021Updated 5 years ago
- Quick script to parse out medications from discharge summaries in MIMIC format. Not that this approach uses minimal NLP, and can be vatly…☆30Nov 18, 2017Updated 8 years ago
- CDM conversion of MIMIC dataset.☆17Jun 19, 2016Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Converting irregularly spaced time series, such as eletronic health records, into dataframes for tabular classification.☆20Jun 17, 2025Updated last year
- Genomic Features in Python from BioConductor's AnnotationHub☆22Sep 14, 2026Updated last week
- Fast array utilities☆15Updated this week
- FlexIble Data-Driven pipeLinE – a preprocessing pipeline that transforms structured EHR data into feature vectors to be used with ML algo…☆100Mar 19, 2026Updated 6 months ago
- Build contrasts for models defined with formulaic☆13Sep 14, 2026Updated last week
- Access public biological ontologies.☆14Aug 7, 2024Updated 2 years ago
- Regression modeling of sub-distribution functions in competing risks☆15Aug 2, 2023Updated 3 years ago
- Deprecated. For the latest MIMIC-IV code, please refer to: https://github.com/MIT-LCP/mimic-code☆305Jun 17, 2021Updated 5 years ago
- Healthcare-specific tools for bias analysis☆39Dec 22, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Replication of the arterial line study in MIMIC-IV☆76Oct 19, 2021Updated 4 years ago
- Miscellaneous collection of functions☆34May 23, 2024Updated 2 years ago
- Code and website related to the eICU Collaborative Research Database☆404Dec 19, 2024Updated last year
- ggplot2-python, full original taste of R ggplot2☆20Jul 16, 2026Updated 2 months ago
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different…☆860Jan 8, 2026Updated 8 months ago
- Code repository for the critical data book☆77Nov 19, 2019Updated 6 years ago
- Code and methods for COVID19 lagged mobility and sociodemographic association model US county-level☆11Feb 12, 2021Updated 5 years ago
- High-Performance Sparse Matrix Library☆19Nov 23, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Installing MIMIC-IV in a local Postgres database☆49Jun 28, 2021Updated 5 years ago
- Python implementation of the paper 'Outcome-Adaptive Lasso: Variable Selection for Causal Inference'☆17Jul 17, 2020Updated 6 years ago
- Study on mechanical power in MIMIC-III and eICU-CRD☆40Jun 30, 2019Updated 7 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆126Apr 26, 2025Updated last year
- Slides for my R/Medicine 2022 talk, "Making Swimmer Plots for Longitudinal Data using {ggplot}".☆12Sep 6, 2022Updated 4 years ago
- MASI Lab Implementation of PheWAS in Python☆28Nov 12, 2024Updated last year
- A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…☆60Apr 9, 2026Updated 5 months ago
- Python package for machine learning for healthcare using a OMOP common data model☆111Jun 17, 2023Updated 3 years ago
- Estimate/compute high-frequency oscillations (HFOs) from iEEG data that are BIDS and MNE compatible using a scikit-learn-style API.☆15Dec 26, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Automated plotting of neuroimaging maps from Python using Connectome Workbench.☆16Apr 3, 2024Updated 2 years ago
- Learning to reinforcement learn and treating sepsis on the side☆17Dec 9, 2017Updated 8 years ago
- ☆43Jan 12, 2026Updated 8 months ago
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- This repository contain a dataset describing the urgency of admission among COVID-19 patients, intended for use in a predictive modeling …☆10Mar 16, 2020Updated 6 years ago
- AmsterdamUMCdb - Freely Accessible ICU database. Please access our Open Access manuscript at https://doi.org/10.1097/CCM.0000000000004916☆217Aug 29, 2026Updated 3 weeks ago
- An R package for performing various cohort diagnostics.☆54Aug 26, 2026Updated 3 weeks ago