Course material for the Foundation in Computational Plant Science course at Michigan State University
☆35Oct 27, 2022Updated 3 years ago
Alternatives and similar repositories for PlantsAndPython
Users that are interested in PlantsAndPython are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Indel-aware consensus for aligned BAM☆22Aug 16, 2025Updated last year
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 4 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆11Sep 17, 2020Updated 6 years ago
- A box of genomics tools☆24Jun 10, 2026Updated 4 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Code and example datasets for Does[0]Compute☆12Dec 2, 2021Updated 4 years ago
- Tools for Plant Image Analysis☆55Sep 12, 2024Updated 2 years ago
- A course offered by Stanford University☆16Sep 4, 2020Updated 6 years ago
- A Semi-Automated Machine Learning Pipeline. Developed by the Shiu Lab. Implemented using SciKit-Learn☆31May 7, 2024Updated 2 years ago
- Repositorio de apuntes y código del curso Introducción a la bioinformática e investigación reproducible para análisis genéticos del semes…☆14Jun 1, 2017Updated 9 years ago
- Course notes and scripts from ASReml-R short course taught by Salvador Gezan at the USDA-ARS station in Miami, FL☆13Jun 22, 2016Updated 10 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Feb 10, 2026Updated 8 months ago
- ☆14Sep 14, 2022Updated 4 years ago
- A library for running k-mers based GWAS☆131Oct 29, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Bayesian estimation of the evolutionary rate matrix.☆10Dec 8, 2025Updated 10 months ago
- Curriculum Vitae☆14Sep 24, 2026Updated 3 weeks ago
- Some code to visualize your iNaturalist data.☆11Apr 6, 2021Updated 5 years ago
- Increased efficiency in identifying mixed pollen samples by meta-barcoding with a dual-indexing approach - Computational methods☆10Jan 19, 2022Updated 4 years ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆22Sep 20, 2022Updated 4 years ago
- Notes du cours GAE-7007 - Analyse et modélisation d'agroécosystèmes☆10Oct 16, 2024Updated 2 years ago
- A toolkit for identifying recombination and recombinant genotypes☆26Dec 3, 2025Updated 10 months ago
- Examples of application of comparative methods in R☆60Oct 3, 2022Updated 4 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Faster estimation of Bayesian models in ecology using Hamiltonian Monte Carlo☆15Oct 11, 2016Updated 10 years ago
- NichePy: a collection of Python scripts for estimating overlap of ecological niche and species distribution models.☆15Dec 5, 2011Updated 14 years ago
- Plugins to draw field trial plots using R scripts in QGIS☆11Jul 16, 2024Updated 2 years ago
- Library for the Handle Graph abstraction☆25Aug 17, 2026Updated 2 months ago
- A minimal tutorial on how to build a neural network classifier based on the iris data set using Keras/TensorFlow in R/RStudio☆18May 4, 2018Updated 8 years ago
- ☆21Nov 1, 2019Updated 6 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 8 months ago
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 8 years ago
- PNNL TES incubation of CPCRW soil cores #openexperiment☆12Aug 29, 2017Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- This repo contains tutorials and data for the workshop on phylogenetic methods being delivered at the 2019 Evolution conference in Provid…☆14Jun 26, 2019Updated 7 years ago
- My résumé/CV in LaTeX☆12Jun 3, 2024Updated 2 years ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆16Jan 9, 2019Updated 7 years ago
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated 2 years ago
- REBIPP: Plant-Pollinator Interactions Data Vocabulary☆32Apr 1, 2025Updated last year
- Code and the final graphs for my TidyTuesday submissions☆11Feb 10, 2024Updated 2 years ago
- Workshop 7 - General and generalized linear mixed models (LMM and GLMM)☆12Sep 3, 2024Updated 2 years ago