Course material for the Foundation in Computational Plant Science course at Michigan State University
☆35Oct 27, 2022Updated 3 years ago
Alternatives and similar repositories for PlantsAndPython
Users that are interested in PlantsAndPython are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated last year
- Analyze and simulate Pool-Seq time series data☆18Jun 16, 2022Updated 4 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆11Sep 17, 2020Updated 6 years ago
- A box of genomics tools☆22Jun 10, 2026Updated 3 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Code and example datasets for Does[0]Compute☆12Dec 2, 2021Updated 4 years ago
- Tools for Plant Image Analysis☆55Sep 12, 2024Updated 2 years ago
- A course offered by Stanford University☆16Sep 4, 2020Updated 6 years ago
- A Semi-Automated Machine Learning Pipeline. Developed by the Shiu Lab. Implemented using SciKit-Learn☆31May 7, 2024Updated 2 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Feb 10, 2026Updated 7 months ago
- ☆11Feb 17, 2025Updated last year
- Repositorio de apuntes y código del curso Introducción a la bioinformática e investigación reproducible para análisis genéticos del semes…☆14Jun 1, 2017Updated 9 years ago
- Course notes and scripts from ASReml-R short course taught by Salvador Gezan at the USDA-ARS station in Miami, FL☆13Jun 22, 2016Updated 10 years ago
- Materials to reproduce the paper "Spatiotemporal patterns of urbanization in three Swiss urban agglomerations: insights from landscape me…☆13Oct 23, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bayesian estimation of the evolutionary rate matrix.☆10Dec 8, 2025Updated 9 months ago
- A library for running k-mers based GWAS☆129Oct 29, 2024Updated last year
- Page for Workshop, "An Ecologist's Introduction to Data Science", presented at ESA/CSEE 2022 and for SORTEE☆10Nov 17, 2022Updated 3 years ago
- Curriculum Vitae☆14Updated this week
- Some code to visualize your iNaturalist data.☆11Apr 6, 2021Updated 5 years ago
- Forest Fuels from Brown's Transects☆11Dec 14, 2018Updated 7 years ago
- Simple scripts for concatenate alignments and rename terminals for phylogenetics☆22Sep 20, 2022Updated 4 years ago
- Increased efficiency in identifying mixed pollen samples by meta-barcoding with a dual-indexing approach - Computational methods☆10Jan 19, 2022Updated 4 years ago
- Notes du cours GAE-7007 - Analyse et modélisation d'agroécosystèmes☆10Oct 16, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A toolkit for identifying recombination and recombinant genotypes☆26Dec 3, 2025Updated 9 months ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆27Sep 14, 2020Updated 6 years ago
- Examples of application of comparative methods in R☆60Oct 3, 2022Updated 3 years ago
- Tools for ecological niche evolution assessment considering uncertainty☆15Mar 10, 2023Updated 3 years ago
- Take a list of Pacbio files (.fofn) and creates a spreadsheet for data submission to the sequuence read archive (SRA)☆12Feb 28, 2016Updated 10 years ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- Trait-Driven Models of Ecology and Evolution☆55Sep 9, 2026Updated last week
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- An R package for Poisson multivariate adaptive shrinkage.☆11Apr 15, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Faster estimation of Bayesian models in ecology using Hamiltonian Monte Carlo☆15Oct 11, 2016Updated 9 years ago
- ☆12May 8, 2021Updated 5 years ago
- NichePy: a collection of Python scripts for estimating overlap of ecological niche and species distribution models.☆15Dec 5, 2011Updated 14 years ago
- Plugins to draw field trial plots using R scripts in QGIS☆10Jul 16, 2024Updated 2 years ago
- Library for the Handle Graph abstraction☆25Aug 17, 2026Updated last month
- ☆31Oct 20, 2023Updated 2 years ago
- A repo contains historical and updated MTEC libraries.☆19Aug 28, 2026Updated 3 weeks ago