Alternatives and similar repositories for DeepNAT:

Users that are interested in DeepNAT are comparing it to the libraries listed below

• CoBrALab / MAGeTbrain
  Multiple Automatically Generated Templates brain segmentation algorithm
  ☆48Updated 7 months ago
• uncbiag / PStrip
  PCA Model for Brain Extraction
  ☆17Updated 6 years ago
• Deep-MI / BrainPrint-legacy
  Python scripts for shape analysis of neuroimaging data (wrapping around shapeDNA and FreeSurfer)
  ☆20Updated 3 years ago
• johncolby / along-tract-stats
  A MATLAB toolbox for performing along-tract analysis of diffusion tensor imaging (DTI) MRI tractography data.
  ☆43Updated 11 years ago
• ofgulban / segmentator
  3D MRI data exploration and segmentation tool.
  ☆74Updated last year
• nipy / mindboggle
  Automated anatomical brain label/shape analysis software (+ website)
  ☆147Updated 3 years ago
• stnava / ANTsTutorial
  Guide to tutorial materials for ANTs/R
  ☆45Updated 6 years ago
• stnava / ANTsDoc
  Documentation for ANTs
  ☆15Updated 9 years ago
• BioMedIA / IRTK
  The Image Registration Toolkit
  ☆79Updated 6 years ago
• KCL-BMEIS / NiftySeg
  ☆27Updated 2 years ago
• BIC-MNI / minc
  OBSOLETE: Medical Image NetCDF, this package is now split into two parts: libminc ( https://github.com/BIC-MNI/libminc ) and minc-tools (…
  ☆33Updated 8 years ago
• poldracklab / pydeface
  defacing utility for MRI images
  ☆113Updated last year
• Entodi / MeshNet
  Code and model of article "End-to-end learning of brain tissue segmentation from imperfect labeling" https://arxiv.org/abs/1612.00940
  ☆16Updated 6 years ago
• adbrebs / brain_segmentation
  Segment 3D MRIs of the brain into anatomical regions
  ☆37Updated 10 years ago
• nipy / nilabels
  Tools to automate simple manipulations and measurements of medical images and segmentations in nifti format.
  ☆21Updated 7 months ago
• cMadan / openMorph
  Curated list of open-access databases with human structural MRI data
  ☆126Updated 5 years ago
• GUR9000 / Deep_MRI_brain_extraction
  3D convolutional neural network for MRI brain extraction
  ☆120Updated 3 years ago
• preprocessed-connectomes-project / NFB_skullstripped
  Repository of hand corrected skullstripping for the Enhanced Rockland Sample Neurofeedback Study
  ☆19Updated 3 years ago
• moloney / dcmstack
  DICOM to Nifti conversion with meta data preservation
  ☆73Updated last month
• binarybottle / braincolor
  brainCOLOR project: brain image labeling protocol and optimal colormap designed for brain images
  ☆15Updated 5 years ago
• cookpa / pipedream
  PipeDream - open source neuroimaging pipelines
  ☆17Updated 5 years ago
• jeffduda / NeuroBattery
  Using ANTs to process multiple MR image types for a single subject
  ☆24Updated 7 years ago
• ASETS / asetsMatlabMaxFlow
  Matlab implementation of continuous max flow variants
  ☆21Updated 8 years ago
• ai-med / QuickNATv2
  Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)
  ☆63Updated 5 years ago
• raamana / graynet
  Subject-wise networks from structural MRI, both vertex- and voxel-wise features (thickness, GM density, curvature, gyrification)
  ☆36Updated 8 months ago
• MarcCote / tractconverter
  Converter for different neuro-imaging file formats.
  ☆19Updated 7 years ago
• pnlbwh / dMRIharmonization
  Multi-site dMRI harmonization
  ☆46Updated last week
• sammba-mri / sammba-mri
  small mammals brain MRI
  ☆16Updated last year
• dama-lab / multi-atlas-segmentation
  Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI
  ☆36Updated 3 months ago
• nmpowell / mousemorph
  Tools for MRI mouse brain morphometry
  ☆30Updated 8 years ago