Alternatives and similar repositories for sbn:

Users that are interested in sbn are comparing it to the libraries listed below

• zcrabbit / PhyloInfer
  Developing efficient Bayesian phylogenetic inference methods
  ☆11Updated 5 years ago
• phylovi / bito
  Python-interface C++ library for Bayesian phylogenetics via optimization
  ☆38Updated last year
• christiaanjs / treeflow
  ☆13Updated 6 months ago
• 4ment / phylostan
  Phylogenetic inference using Stan
  ☆24Updated 2 months ago
• popgenmethods / defiNETti
  defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…
  ☆20Updated 7 years ago
• 4ment / torchtree
  A probabilistic framework in PyTorch for phylogenetic models
  ☆16Updated 5 months ago
• diyabc / abcranger
  ABC random forests for model choice and parameter estimation, pure C++ implementation
  ☆9Updated 7 months ago
• ignacioq / Tapestree.jl
  ☆15Updated 2 weeks ago
• caseywdunn / phylogenetic_biology
  A book for my course
  ☆17Updated 5 months ago
• ihh / trajectory-likelihood
  Calculate indel trajectory likelihoods using methods of Miklós, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)
  ☆14Updated 2 years ago
• popgenmethods / pyrho
  Fast inference of fine-scale recombination rates based on fused-LASSO
  ☆50Updated last month
• JuliaPhylo / PhyloCoalSimulations.jl
  ☆14Updated 4 months ago
• jsilve24 / fido
  Multinomial Logistic-Normal Models (really fast)
  ☆20Updated 2 months ago
• zcrabbit / vbpi-gnn
  Code for learnable topological features for phylogenetic inference via graph neural networks
  ☆10Updated 2 years ago
• eelhaik / PCA_critique
  ☆13Updated 2 years ago
• tothuhien / lsd-0.3beta
  ☆12Updated 5 years ago
• ms609 / TreeDist
  Calculate distances between phylogenetic trees in R
  ☆32Updated last week
• harrispopgen / mushi
  [mu]tation [s]pectrum [h]istory [i]nference
  ☆25Updated 4 months ago
• jbloomlab / SARS2-RBD-escape-calc
  SARS-CoV-2 RBD antibody escape calculator
  ☆12Updated 5 months ago
• solislemuslab / BayesianNetworkRegression.jl
  ☆12Updated 8 months ago
• pablocarderam / opqua
  Epidemiological modeling framework for pathogen population genetics and evolution.
  ☆17Updated 7 months ago
• lh3 / asub
  A unified array job submitter for LSF, SGE/UGE and Slurm
  ☆32Updated 6 months ago
• flatironinstitute / catvae
  Categorical Variational Autoencoders
  ☆24Updated 3 years ago
• younglululu / CAFE
  aCcelerated Alignment-FrEe sequence analysis
  ☆13Updated 7 years ago
• lauterbur / Flex-sweep
  Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.
  ☆14Updated last year
• Wytamma / beastiary
  Real time and remote MCMC trace monitoring with BEASTIARY.
  ☆20Updated this week
• jsigao / prioritree
  ☆9Updated 2 years ago
• debbiemarkslab / MuE
  A package for making MuE observation models in Edward2.
  ☆13Updated 3 years ago
• duchene / phylomad
  ☆19Updated 10 months ago
• evolbioinfo / pastml
  Ancestral character reconstruction and visualisation for rooted phylogenetic trees
  ☆32Updated last week