Alternatives and similar repositories for DeepMSProfiler

Users that are interested in DeepMSProfiler are comparing it to the libraries listed below

• wilhelm-lab / PROSPECT
  Proteomics Mass Spectrometry Datasets for Machine Learning
  ☆19Updated 11 months ago
• eMetaboHUB / FragHub
  ☆14Updated last month
• yonghanyu / DeepSearch
  ☆19Updated 4 months ago
• instadeepai / InstaNovo
  De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments
  ☆93Updated last month
• iomega / spec2vec
  Word2Vec based similarity measure of mass spectrometry data.
  ☆72Updated 11 months ago
• a96123155 / TransPHLA-AOMP
  ☆47Updated 3 years ago
• carpenter-singh-lab / 2023_Arevalo_NatComm_BatchCorrection
  Evaluating batch correction methods for image-based cell profiling
  ☆14Updated 7 months ago
• jingbo02 / Awesome-Denovo-Peptide-Sequencing
  Paper collection about de novo peptide Sequening
  ☆18Updated 6 months ago
• LabLaskin / MSI-self-supervised-clustering
  Autonomous and accurate clustering of co-localized ion images in a self-supervised manner.
  ☆11Updated 3 years ago
• KhawlaSeddiki / 1D-MS_CumulativeLearningCNNs
  ☆13Updated 4 years ago
• CompOmics / IM2Deep
  Collisional cross-section prediction for modified and multiconformational peptides
  ☆12Updated this week
• idrblab / NOREVA
  R Package for Systematic Optimization of Metabolomic Data Processing
  ☆17Updated 4 months ago
• wfondrie / depthcharge
  A deep learning toolkit for mass spectrometry
  ☆81Updated last year
• ml4bio / USPNet
  Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model
  ☆32Updated 2 months ago
• hcji / DeepMASS
  A known-to-unknown metabolite identification workflow
  ☆20Updated 4 years ago
• broadinstitute / cellpainting-gallery
  Cell Painting Gallery
  ☆100Updated this week
• myzhengSIMM / TranSiGen
  ☆30Updated 6 months ago
• matchms / ms2deepscore
  Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity
  ☆67Updated 2 weeks ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆41Updated last year
• gagneurlab / spectralis
  ☆14Updated 10 months ago
• pgmikhael / protgps
  ☆92Updated last month
• AmadeusloveIris / GraphNovo
  ☆15Updated last year
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆129Updated last month
• bzhanglab / deep_learning_in_proteomics
  A list of tools on proteomics using deep learning
  ☆97Updated last year
• pengxingang / TEIM
  TEIM: TCR-Epitope Interaction Modeling
  ☆50Updated 2 years ago
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆70Updated last week
• lkytal / PredFull
  This work was published on Analytical Chemistry: Full-Spectrum Prediction of Peptides Tandem Mass Spectra using Deep Neural Network
  ☆31Updated 2 years ago
• Noble-Lab / casanovo
  De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
  ☆149Updated last week
• wilhelm-lab / oktoberfest
  Rescoring and spectral library generation pipeline for proteomics.
  ☆46Updated 2 weeks ago
• GENTEL-lab / OriGene
  OriGene: A Self-Evolving Virtual Disease Biologist for Mechanism-Guided Therapeutic Target Discovery
  ☆135Updated this week