Alternatives and similar repositories for DeepMSProfiler

Users that are interested in DeepMSProfiler are comparing it to the libraries listed below

• Perturbation-Response-Prediction / PRnet
  PRnet is a flexible and scalable perturbation-conditioned generative model predicting transcriptional responses to unseen complex perturb…
  ☆47Updated 5 months ago
• MannLabs / alphapeptdeep
  Deep learning framework for proteomics
  ☆128Updated last week
• wilhelm-lab / PROSPECT
  Proteomics Mass Spectrometry Datasets for Machine Learning
  ☆16Updated 9 months ago
• eMetaboHUB / FragHub
  ☆12Updated this week
• a96123155 / TransPHLA-AOMP
  ☆44Updated 3 years ago
• pengxingang / TEIM
  TEIM: TCR-Epitope Interaction Modeling
  ☆48Updated last year
• idrblab / NOREVA
  R Package for Systematic Optimization of Metabolomic Data Processing
  ☆17Updated last month
• wfondrie / depthcharge
  A deep learning toolkit for mass spectrometry
  ☆77Updated 9 months ago
• ml4bio / USPNet
  Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model
  ☆30Updated this week
• MannLabs / alphabase
  Infrastructure of AlphaX ecosystem
  ☆37Updated this week
• bzhanglab / deep_learning_in_proteomics
  A list of tools on proteomics using deep learning
  ☆96Updated last year
• MannLabs / alphapeptstats
  Python Package for the downstream analysis of mass-spectrometry-based proteomics data
  ☆68Updated this week
• iomega / spec2vec
  Word2Vec based similarity measure of mass spectrometry data.
  ☆66Updated 9 months ago
• gagneurlab / spectralis
  ☆13Updated 7 months ago
• yonghanyu / DeepSearch
  ☆18Updated last month
• broadinstitute / cellpainting-gallery
  Cell Painting Gallery
  ☆89Updated last week
• Roestlab / PythonProteomics
  A collection of available Python tools for Proteomics analysis
  ☆57Updated 6 years ago
• instadeepai / InstaNovo
  De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments
  ☆80Updated 3 weeks ago
• carpenter-singh-lab / 2023_Arevalo_NatComm_BatchCorrection
  Evaluating batch correction methods for image-based cell profiling
  ☆13Updated 4 months ago
• hcji / DeepMASS
  A known-to-unknown metabolite identification workflow
  ☆20Updated 4 years ago
• MannLabs / alphamap
  An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
  ☆82Updated 2 months ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆39Updated last year
• MannLabs / alphadia
  modular & open DIA search
  ☆71Updated this week
• Functional-Metabolomics-Lab / FBMN-STATS
  FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks
  ☆38Updated 3 months ago
• matchms / ms2deepscore
  Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity
  ☆61Updated 2 months ago
• mobiusklein / brainpy
  A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations
  ☆21Updated 4 months ago
• bsml320 / ImmuneApp
  ImmuneApp for HLA-I epitope prediction and immunopeptidome analysis
  ☆13Updated 7 months ago
• lmsac / DeepDIA
  Using deep learning to generate in silico spectral libraries for data-independent acquisition analysis.
  ☆42Updated 2 years ago
• myzhengSIMM / TranSiGen
  ☆28Updated 3 months ago
• wilhelm-lab / koina
  Democratizing ML in proteomics
  ☆37Updated this week