wdlv / PubMed
Web scraping PubMed database and paper information visualization
☆40Updated 7 years ago
Alternatives and similar repositories for PubMed:
Users that are interested in PubMed are comparing it to the libraries listed below
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆106Updated last month
- Machine-learning based pipeline relying on LambdaMART currently used in PubMed for relevance (Best Match) searches☆40Updated 6 years ago
- A Python package to download full article PDFs from OA publications☆40Updated last month
- In this tutorial, we go over the features of statannotations☆25Updated 3 years ago
- PyMed is a Python library that provides access to PubMed.☆203Updated 3 years ago
- Lookup PubMed records and make Publication objects with info about a scientific publication☆41Updated 2 years ago
- Introduction to Computational Biomedicine and Machine Learning☆15Updated 9 months ago
- Automatic synthesis of RCTs☆145Updated 2 years ago
- Publicly available dataset for bioinformatics and integrative -omics research☆44Updated 9 years ago
- ☆23Updated last month
- Fetches PubMed article IDs (PMIDs) from email inbox, then crawls PubMed, Google Scholar and Sci-Hub for respective PDF files.☆33Updated 6 years ago
- a module to calculate the MeSH similarity☆24Updated 3 years ago
- A database of paths that represent the mechanism of action from a drug to a disease in an indication.☆58Updated last year
- ☆58Updated 3 years ago
- PubMed analysis: code and data☆96Updated 2 years ago
- Community-contributed and experimental CellProfiler modules.☆63Updated 3 weeks ago
- Python script that downloads all pubmed abstracts corresponding to user-specified keyword searches, by performing automated NCBI E-utilit…☆30Updated 4 years ago
- Batch download articles based on PMID (Pubmed ID)☆117Updated last year
- Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …☆73Updated last year
- A Python module for loading phenotypic and genetic data from the UK Biobank.☆35Updated 3 years ago
- Literature Scanner: Automated collection & analyses of the scientific literature.☆101Updated last week
- ☆23Updated 2 years ago
- ☆40Updated 4 years ago
- python / numpy / pandas / patsy version of ComBat for removing batch effects.☆102Updated 6 years ago
- OBO-formatted ontologies → networkx (Python 3)☆138Updated 7 months ago
- PDF Downloader with SCI-HUB☆46Updated last year
- The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream☆62Updated last year
- Subtype and Stage Inference (SuStaIn) algorithm with an example using simulated data.☆148Updated last month
- Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.☆35Updated 5 years ago
- A resource of adverse drug effects extracted from FDA structured product labels☆68Updated 2 weeks ago