wdlv / PubMedLinks
Web scraping PubMed database and paper information visualization
☆40Updated 8 years ago
Alternatives and similar repositories for PubMed
Users that are interested in PubMed are comparing it to the libraries listed below
Sorting:
- PyMed is a Python library that provides access to PubMed.☆214Updated 4 years ago
- Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.☆142Updated 5 months ago
- add statistical annotations (pvalue significance) on an existing boxplot generated by seaborn boxplot☆406Updated 3 years ago
- PubMed analysis: code and data☆97Updated 3 years ago
- ☆67Updated 4 years ago
- In this tutorial, we go over the features of statannotations☆28Updated 4 years ago
- Python script that downloads all pubmed abstracts corresponding to user-specified keyword searches, by performing automated NCBI E-utilit…☆32Updated 5 years ago
- Use gpt to summarize abstracts for a pubmed query☆40Updated 2 years ago
- Create "Table 1" for research papers in Python☆187Updated this week
- Python interface to NHANES dataset☆34Updated 2 years ago
- Automatic synthesis of RCTs☆171Updated 3 years ago
- The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream☆66Updated 7 months ago
- Batch download articles based on PMID (Pubmed ID)☆134Updated 2 years ago
- Open source engine for matching cancer patients to precision medicine clinical trials (V2).☆38Updated 2 years ago
- Community-contributed and experimental CellProfiler modules.☆72Updated 3 weeks ago
- Code repository for the critical data book☆76Updated 6 years ago
- A Python package to download full article PDFs from OA publications☆54Updated last year
- Tofu is a Python tool for generating synthetic UK Biobank data.☆68Updated 2 years ago
- ☆25Updated 3 years ago
- Winning solution of the Novartis Data Science and Artificial Intelligence 2019/2020 competition☆24Updated 4 years ago
- OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies☆96Updated 2 years ago
- MASI Lab Implementation of PheWAS in Python☆28Updated last year
- Machine-learning based pipeline relying on LambdaMART currently used in PubMed for relevance (Best Match) searches☆43Updated 7 years ago
- The new PhysioNet platform.☆78Updated this week
- PubMed scraper for async search on a list of keywords and concurrent extraction of all found URLs, returning a DataFrame/CSV containing a…☆44Updated 5 years ago
- Fetches PubMed article IDs (PMIDs) from email inbox, then crawls PubMed, Google Scholar and Sci-Hub for respective PDF files.☆35Updated 7 years ago
- Generate safety signal statistics from FDA FAERS data☆52Updated last year
- Programmatic interface to Synapse services for Python☆78Updated this week
- A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.☆59Updated 2 years ago
- Python Programming for Biologists☆145Updated last week