Alternatives and similar repositories for public-bioinformatics-datasets

Users that are interested in public-bioinformatics-datasets are comparing it to the libraries listed below

• ucscXena / xenaPython
  Python API for Xena Hub
  ☆53Updated 2 years ago
• BIMSBbioinfo / compgen2021
  ☆77Updated 4 years ago
• ICGC-TCGA-PanCancer / TumorType-WGS
  Classifying tumor types based on Whole Genome Sequencing (WGS) data
  ☆48Updated last year
• mdozmorov / TCGAsurvival
  Scripts to analyze TCGA data
  ☆124Updated last year
• greenelab / pancancer
  Building classifiers using cancer transcriptomes across 33 different cancer-types
  ☆120Updated 6 years ago
• cclab-brca / neoadjuvant-therapy-response-predictor
  ☆55Updated 2 years ago
• abidlabs / deep-learning-genomics-primer
  Contains files for the deep learning in genomics primer.
  ☆266Updated 6 years ago
• chanzuckerberg / scRNA-python-workshop
  All the action is on the course webpage -->
  ☆29Updated 10 months ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• rezacsedu / XAI-for-bioinformatics
  Explainable AI for Bioinformatics
  ☆125Updated 2 years ago
• burkesquires / python_biologist
  Python Programming for Biologists
  ☆140Updated last week
• czbiohub-sf / learn-bioinformatics
  List of resources for learning bioinformatics, from beginner to advanced
  ☆104Updated 7 years ago
• mdozmorov / Bioinformatics_notes
  Bioinformatics and genomics resources
  ☆78Updated 2 months ago
• seandavi / awesome-cancer-variant-resources
  A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
  ☆318Updated 7 months ago
• davidnboone / tcga_brca_rnaseq
  jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data
  ☆33Updated 6 years ago
• bhklab / PharmacoGx
  R package to analyze large-scale pharmacogenomic datasets.
  ☆71Updated last week
• NVIDIA-Genomics-Research / AtacWorks
  Deep learning based processing of Atac-seq data
  ☆131Updated 2 years ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆94Updated 4 years ago
• mit6874 / mit6874.github.io
  ☆51Updated 4 years ago
• BioinformaticsFMRP / TCGAWorkflow
  TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
  ☆49Updated 2 years ago
• compgenome365 / TCGA-Assembler-2
  TCGA-Assembler 2
  ☆77Updated 7 years ago
• crazyhottommy / biotech_resource
  some resources for startup companies
  ☆56Updated last year
• ArnovanHilten / GenNet
  Framework for Interpretable Neural Networks
  ☆111Updated 6 months ago
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆102Updated last year
• DeplanckeLab / ASAP
  ASAP : Automated Single-cell Analysis Pipeline
  ☆27Updated 4 months ago
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆87Updated this week
• openvax / neoantigen-vaccine-pipeline
  Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines
  ☆86Updated 3 weeks ago
• CSB5 / CaDRReS
  Cancer Drug Response prediction using a Recommender System
  ☆42Updated 2 years ago
• Christensen-Lab-Dartmouth / MethylNet
  Modular framework for deep learning predictions on methylation data.
  ☆55Updated 5 years ago
• Christensen-Lab-Dartmouth / PyMethylProcess
  Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
  ☆36Updated 5 years ago