Alternatives and similar repositories for public-bioinformatics-datasets

Users that are interested in public-bioinformatics-datasets are comparing it to the libraries listed below

• ICGC-TCGA-PanCancer / TumorType-WGS
  Classifying tumor types based on Whole Genome Sequencing (WGS) data
  ☆48Updated last year
• greenelab / pancancer
  Building classifiers using cancer transcriptomes across 33 different cancer-types
  ☆121Updated 6 years ago
• davidnboone / tcga_brca_rnaseq
  jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data
  ☆33Updated 6 years ago
• NBISweden / workshop_omics_integration
  Workshop in omics integration and systems biology
  ☆83Updated 11 months ago
• ucscXena / xenaPython
  Python API for Xena Hub
  ☆53Updated 2 years ago
• NVIDIA-Genomics-Research / AtacWorks
  Deep learning based processing of Atac-seq data
  ☆131Updated 2 years ago
• ArnovanHilten / GenNet
  Framework for Interpretable Neural Networks
  ☆111Updated 7 months ago
• compgenome365 / TCGA-Assembler-2
  TCGA-Assembler 2
  ☆77Updated 7 years ago
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆107Updated last year
• chanzuckerberg / scRNA-python-workshop
  All the action is on the course webpage -->
  ☆30Updated 11 months ago
• Christensen-Lab-Dartmouth / PyMethylProcess
  Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
  ☆36Updated 5 years ago
• urmi-21 / COVID-19-RNA-Seq-datasets
  A repository for sharing information on available COVID-19 RNA-Seq datasets
  ☆81Updated 3 years ago
• bioinform / neusomatic
  NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection
  ☆171Updated 3 years ago
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆92Updated this week
• hmsrc / user-training
  HMS Research Computing User Training
  ☆93Updated last week
• mdozmorov / TCGAsurvival
  Scripts to analyze TCGA data
  ☆126Updated last year
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• arnor-sigurdsson / EIR
  A toolkit for training deep learning models on genotype, tabular, sequence, image, array and binary data.
  ☆42Updated last week
• bioFAM / MOFA
  Multi-Omics Factor Analysis
  ☆252Updated 5 years ago
• czbiohub-sf / learn-bioinformatics
  List of resources for learning bioinformatics, from beginner to advanced
  ☆105Updated 7 years ago
• cclab-brca / neoadjuvant-therapy-response-predictor
  ☆55Updated 2 years ago
• crazyhottommy / biotech_resource
  some resources for startup companies
  ☆56Updated 2 years ago
• RasmussenLab / MOVE
  MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations
  ☆88Updated last year
• rezacsedu / XAI-for-bioinformatics
  Explainable AI for Bioinformatics
  ☆126Updated 2 years ago
• BIMSBbioinfo / compgen2021
  ☆77Updated 4 years ago
• minoh0201 / DeepMicro
  Deep representation learning for disease prediction based on microbiome data
  ☆62Updated 2 years ago
• bhklab / PharmacoGx
  R package to analyze large-scale pharmacogenomic datasets.
  ☆71Updated last month
• stanleyn / Comp790-166-Comp-Bio
  Computational Biology- Spring 2021
  ☆48Updated 4 years ago
• CSB5 / CaDRReS
  Cancer Drug Response prediction using a Recommender System
  ☆42Updated 2 years ago
• mdozmorov / Cancer_notes
  A continually expanding collection of cancer genomics notes and data
  ☆108Updated 2 weeks ago