Alternatives and similar repositories for crate:

Users that are interested in crate are comparing it to the libraries listed below

• OHDSI / NLPTools
  [in development] Tools to support Natural Language Processing of freetext to create structured data elements for analysis
  ☆32Updated last year
• p2 / ClinicalTrialsNLP
  Classes for ClinicalTrials.gov related projects
  ☆47Updated 5 years ago
• ml4health / ml4health.github.io
  Website for ML4H Symposium
  ☆22Updated 7 months ago
• Tian312 / EliIE
  An information extraction system for free-text eligibility criteria
  ☆36Updated 6 years ago
• uf-hobi-informatics-lab / NLPreprocessing
  A comprehensive NLP preprocessing package for clinical notes sentence boundary detection, tokenization
  ☆30Updated 8 months ago
• medspacy / sectionizer
  A rule-based Python module for spitting documents into sections.
  ☆12Updated 4 years ago
• ncbo / ncbo_rest_sample_code
  Sample code that demonstrates the use of the NCBO REST services
  ☆41Updated last year
• CogStack / CogStack-Pipeline
  Distributed, fault tolerant batch processing for Natural Language Applications and Search, using remote partitioning
  ☆41Updated 2 years ago
• NUSCRIPT / OMOP_to_Graph
  Transform the OMOP model to graph model
  ☆19Updated last month
• PEDSnet / Data-Quality-Analysis
  The PEDSnet Data Quality Assessment Toolkit (OMOP CDM)
  ☆24Updated 3 years ago
• dbmi-pitt / UMLS-Graph
  UMLS Graph database for semantic queries
  ☆20Updated 2 years ago
• clinicalml / prancer
  Platform enabling Rapid Annotation for Clinical Entity Recognition
  ☆50Updated 2 years ago
• jasonost / clinicaltrials
  ☆13Updated 9 years ago
• blpercha / umls-to-graph
  Code for manipulating the structure of UMLS files and converting ontologies or sets of ontologies into a graph structure.
  ☆41Updated 4 years ago
• federated-data-sharing / common-api
  OpenAPI definitions for the Federated Data Sharing Common API
  ☆17Updated 2 years ago
• CogStack / CogStack-SemEHR
  Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research
  ☆89Updated 2 years ago
• dirkweissenborn / ctakes-server
  A simple REST-server around ctakes clinical pipeline.
  ☆30Updated 7 years ago
• LHNCBC / metamaplite
  A near real-time named-entity recognizer
  ☆59Updated 8 months ago
• shyamvis / ACT-COVID-Ontology
  ACT COVID Ontology
  ☆15Updated 3 years ago
• OHDSI / Athena
  Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM
  ☆60Updated 3 months ago
• ncbi-nlp / ezTag
  Web interface that allows users to perform computer-assisted text annotation
  ☆16Updated 2 years ago
• OHDSI / OMOP-Queries
  ☆26Updated 6 years ago
• OHDSI / FeatureExtraction
  An R package for generating features (covariates) for a cohort using data in the Common Data Model.
  ☆61Updated 3 months ago
• NCBI-Hackathons / CTEligible
  Use machine learning to find patterns of similar eligibility protocol criteria for clinical trials
  ☆18Updated 6 years ago
• ncbi-nlp / DeepRel
  A convolutional neural network model for relation extraction.
  ☆13Updated last year
• imsweb / naaccr-xml
  This Java library provides support for the NAACCR XML format.
  ☆13Updated 2 weeks ago
• ebmdatalab / registry_scrapers_parsers
  Code to scrape/handle/extract data from various ICTRP Primary Registries
  ☆20Updated 2 years ago
• ckbjimmy / clneg
  Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification
  ☆21Updated 4 years ago
• chapmanbe / pyConTextNLP
  ☆98Updated last year
• OHDSI / KnowledgeBase
  Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and hea…
  ☆55Updated 6 years ago