raphaelreme / expyrunLinks
Launch, store and reproduce ML experiments from configuration files
☆12Updated 4 months ago
Alternatives and similar repositories for expyrun
Users that are interested in expyrun are comparing it to the libraries listed below
Sorting:
- ☆12Updated 3 months ago
- Code for TraSE-IN paper☆13Updated 7 months ago
- Biological Mutliple Object Tracking (2D/3D)☆20Updated last month
- Code and data for "Particle tracking in biological images with optical-flow enhanced Kalman filtering"☆16Updated 3 months ago
- Unsupervised, one-shot, instance-based active contour/snake using deep learning features in python.☆18Updated 6 months ago
- Implementation of ThinPlateSpline☆32Updated last month
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆38Updated last week
- Transformer-based cell tracking for live-cell microscopy☆123Updated last week
- Exercise repository for the "Deep Learning for Microscopy Image Analysis" course at the MBL.☆10Updated 3 years ago
- Time arrow prediction for live-cell microscopy☆21Updated last year
- [ECCV 2022] Official PyTorch implementation of the paper - Graph Neural Network for Cell Tracking in Microscopy Videos☆77Updated 3 years ago
- [NeurIPS 2022] DMAP: a Distributed Morphological Attention Policy for Learning to Locomote with a Changing Body☆18Updated 2 years ago
- Cell tracking and segmentation software☆168Updated this week
- Information and python tools for the GridTape-TEM dataset of an adult female fly's Brain And Nerve Cord☆15Updated last month
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆114Updated 4 months ago
- A napari plugin for making animations☆95Updated last week
- Visual interpretability of image-based classification models by generative latent space disentanglement☆12Updated 7 months ago
- Multi-Object Tracker using Integer Linear Equations☆38Updated last month
- dask empowered fast4dreg☆15Updated last year
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆238Updated 11 months ago
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆60Updated this week
- Pipeline for putting surface meshes into correspondence☆26Updated 3 years ago
- ☆12Updated 2 years ago
- ☆16Updated this week
- A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…☆119Updated this week
- A collection of datasets and neural networks for microorganism image classification☆14Updated 11 months ago
- Repository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for …☆39Updated this week
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆55Updated 2 months ago
- SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.☆27Updated last year
- Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.☆261Updated 2 months ago