raphaelreme / expyrunLinks
Launch, store and reproduce ML experiments from configuration files
☆12Updated last month
Alternatives and similar repositories for expyrun
Users that are interested in expyrun are comparing it to the libraries listed below
Sorting:
- ☆12Updated last month
- Code for TraSE-IN paper☆13Updated 4 months ago
- Biological particle tracking (2D/3D)☆20Updated 2 weeks ago
- Code and data for "Particle tracking in biological images with optical-flow enhanced Kalman filtering"☆15Updated last month
- Unsupervised, one-shot, instance-based active contour/snake using deep learning features in python.☆17Updated 3 months ago
- Utilities for computing common accuracy metrics on cell tracking solutions with ground truth☆36Updated last week
- Multi-Object Tracker using Integer Linear Equations☆38Updated last week
- Collection of connectomic papers and datasets.☆16Updated last year
- [ECCV 2022] Official PyTorch implementation of the paper - Graph Neural Network for Cell Tracking in Microscopy Videos☆76Updated 2 years ago
- AI-enabled Mouse Organ Segmentation☆14Updated 4 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆57Updated last month
- Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.☆260Updated last month
- Information and python tools for the GridTape-TEM dataset of an adult female fly's Brain And Nerve Cord☆15Updated last month
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 3 months ago
- Multiplatform 3D numpy image browser based viewer with voxel painting.☆15Updated this week
- A napari plugin for making animations☆89Updated last month
- 🌈☆66Updated last month
- Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)☆180Updated last week
- ☆42Updated 2 weeks ago
- ☆12Updated last year
- Implementation of ThinPlateSpline☆30Updated last month
- Pipeline for putting surface meshes into correspondence☆26Updated 2 years ago
- Transformer-based cell tracking for live-cell microscopy☆109Updated this week
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆34Updated last week
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.☆91Updated last year
- Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.☆29Updated 2 years ago
- Tools for distributed alignment of massive images☆89Updated 2 months ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆130Updated last month
- Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries …☆433Updated 3 weeks ago