Alternatives and similar repositories for deep-trainer

Users that are interested in deep-trainer are comparing it to the libraries listed below

• raphaelreme / expyrun
  Launch, store and reproduce ML experiments from configuration files
  ☆12Updated 4 months ago
• raphaelreme / trase-in
  Code for TraSE-IN paper
  ☆13Updated 7 months ago
• raphaelreme / byotrack
  Biological Mutliple Object Tracking (2D/3D)
  ☆20Updated last month
• raphaelreme / koft
  Code and data for "Particle tracking in biological images with optical-flow enhanced Kalman filtering"
  ☆16Updated 3 months ago
• antoinehabis / Deep-ContourFlow
  Unsupervised, one-shot, instance-based active contour/snake using deep learning features in python.
  ☆18Updated 5 months ago
• Deep-MI / LaPy
  Toolbox for Differential Geometry on Triangle and Tetrahedra Meshes (FEM, Laplace, Poisson, Heat Flow ...)
  ☆97Updated last week
• OSchoppe / AIMOS
  AI-enabled Mouse Organ Segmentation
  ☆14Updated 5 years ago
• seung-lab / euclidean-distance-transform-3d
  Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
  ☆261Updated 2 months ago
• tlambert03 / microsim
  Light microscopy simulation in python.
  ☆43Updated 3 weeks ago
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆22Updated 2 years ago
• napari / napari-animation
  A napari plugin for making animations
  ☆95Updated this week
• brainglobe / morphapi
  A Python package to download neuronal morphologies
  ☆18Updated this week
• raphaelreme / tps
  Implementation of ThinPlateSpline
  ☆32Updated last month
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆65Updated 3 weeks ago
• CAREamics / careamics
  A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…
  ☆119Updated this week
• imyiningliu / cellstitch
  ☆12Updated 2 years ago
• sebi06 / czitools
  This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it al…
  ☆17Updated last week
• kaloeffler / EmbedTrack
  ☆21Updated 3 years ago
• DanuserLab / u-segment3D
  Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…
  ☆55Updated last month
• seung-lab / kimimaro
  Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
  ☆188Updated 3 weeks ago
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆168Updated this week
• uhlmanngroup / muMatch
  Pipeline for putting surface meshes into correspondence
  ☆26Updated 3 years ago
• Sentinal4D / cellshape
  3D shape analysis using deep learning
  ☆29Updated 4 months ago
• hadim / read-roi
  Read ROI files .zip or .roi generated with ImageJ.
  ☆53Updated 3 years ago
• mrymsadeghi / AMBIA
  ☆37Updated 5 months ago
• marissaweis / ssl_neuron
  Code to the paper "Self-Supervised Graph Representation Learning for Neuronal Morphologies"
  ☆16Updated last year
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆60Updated last month
• google-research / sofima
  Scalable Optical Flow-based Image Montaging and Alignment
  ☆87Updated last week
• live-image-tracking-tools / traccuracy
  Utilities for computing common accuracy metrics on cell tracking solutions with ground truth
  ☆38Updated this week
• glichtner / pystackreg
  A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.
  ☆92Updated last year