pb3lab / ibm3202

Related projects ⓘ

Alternatives and complementary repositories for ibm3202

• pablo-arantes / making-it-rain
  Cloud-based molecular simulations for everyone
  ☆393Updated 3 weeks ago
• AngelRuizMoreno / Jupyter_Dock
  Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting f…
  ☆259Updated last year
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆296Updated last week
• nrbennet / dl_binder_design
  ☆248Updated 3 months ago
• PDB-REDO / dssp
  Application to assign secondary structure to proteins
  ☆168Updated last month
• Discngine / fpocket
  fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scien…
  ☆299Updated 2 months ago
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆492Updated 3 months ago
• Valdes-Tresanco-MS / gmx_MMPBSA
  gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.
  ☆229Updated 2 weeks ago
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆265Updated 3 weeks ago
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆319Updated 4 months ago
• KosinskiLab / AlphaPulldown
  ☆218Updated this week
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆245Updated last year
• pharmai / plip
  Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme …
  ☆464Updated 3 months ago
• zrqiao / NeuralPLexer
  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
  ☆267Updated 7 months ago
• RosettaCommons / DeepAb
  Deep learning models and structure realization scripts for the DeepAb antibody structure prediction method.
  ☆147Updated last year
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆188Updated 6 months ago
• bjornwallner / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆224Updated 2 months ago
• rdk / p2rank
  P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.
  ☆252Updated last week
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆175Updated last year
• forlilab / Meeko
  Interface for AutoDock, molecule parameterization
  ☆204Updated this week
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆205Updated 3 months ago
• openmm / pdbfixer
  PDBFixer fixes problems in PDB files
  ☆494Updated last week
• lightdock / lightdock
  Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
  ☆307Updated 10 months ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆127Updated last month
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆99Updated last year
• guyujun / pyrosetta-basic
  ☆147Updated 3 years ago
• Pymol-Scripts / Pymol-script-repo
  Collected scripts for Pymol
  ☆448Updated last month
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆135Updated 2 months ago
• harmslab / pdbtools
  A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files
  ☆170Updated 5 years ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆289Updated 2 months ago