[ACL 2024 Findings] This is the code for our paper "Knowledge-Infused Prompting: Assessing and Advancing Clinical Text Data Generation with Large Language Models".
☆43Jun 23, 2024Updated 2 years ago
Alternatives and similar repositories for ClinGen
Users that are interested in ClinGen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [EMNLP 2024] This is the code for our paper "BMRetriever: Tuning Large Language Models as Better Biomedical Text Retrievers".☆26Sep 19, 2024Updated last year
- [ACL 2024] This is the code for our paper ”RAM-EHR: Retrieval Augmentation Meets Clinical Predictions on Electronic Health Records“.☆42Sep 19, 2024Updated last year
- [ML4H 2022] This is the code for our paper `Counterfactual and Factual Reasoning over Hypergraphs for Interpretable Clinical Predictions …☆27Feb 6, 2024Updated 2 years ago
- [ACL'23 Findings] This is the code repo for our ACL'23 Findings paper "ReGen: Zero-Shot Text Classification via Training Data Generation …☆24Sep 8, 2023Updated 2 years ago
- ☆30Apr 8, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A curated list of awesome healthcare taxonomies and knowledge graphs.☆80Mar 24, 2024Updated 2 years ago
- NeurIPS'24 DB (Spotlight) | Instruction Tuning Large Language Models to Understand Electronic Health Records☆61Jul 17, 2026Updated last month
- [KDD'23] This is the code repo for our KDD'23 paper "DyGen: Learning from Noisy Labels via Dynamics-Enhanced Generative Modeling".☆11Jun 14, 2023Updated 3 years ago
- This is the repository for paper `Learning Task-Aware Effective Brain Connectivity for fMRI Analysis with Graph Neural Networks'.☆14Nov 22, 2023Updated 2 years ago
- [EMNLP'24] EHRAgent: Code Empowers Large Language Models for Complex Tabular Reasoning on Electronic Health Records☆141Dec 26, 2024Updated last year
- Official Code Repository for paper "HYDRA: Model Factorization Framework for Black-Box LLM Personalization"☆16Oct 7, 2024Updated last year
- [ICLR'26] MedAgentGYM: Training LLM Agents for Code-Based Medical Reasoning at Scale☆131Apr 12, 2026Updated 4 months ago
- [Patterns] MedAgentsBench: Benchmarking Thinking Models and Agent Frameworks for Complex Medical Reasoning☆85Aug 18, 2026Updated 2 weeks ago
- [EMNLP 2022] This is the code repo for our EMNLP‘22 paper "COCO-DR: Combating Distribution Shifts in Zero-Shot Dense Retrieval with Contr…☆51Oct 12, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code for "DocLens: Multi-aspect Fine-grained Evaluation for Medical Text Generation" (ACL 2024)☆22May 18, 2024Updated 2 years ago
- EMNLP'22 | PromptEHR: Conditional Electronic Healthcare Records Generation with Prompt Learning☆31Jun 8, 2023Updated 3 years ago
- ☆22Jun 9, 2025Updated last year
- Hierarchical Models for long document encoding☆22May 29, 2023Updated 3 years ago
- Code for "BERTifying the Hidden Markov Model for Multi-Source Weakly Supervised Named Entity Recognition"☆32Jun 20, 2023Updated 3 years ago
- ☆14Jan 6, 2025Updated last year
- [NeurIPS 2024 D&B] Official code for "EHRNoteQA: An LLM Benchmark for Real-World Clinical Practice Using Discharge Summaries"☆44Jan 11, 2025Updated last year
- Official implementation of TACCO (Task-guided Co-clustering).☆16Aug 31, 2024Updated 2 years ago
- Pytorch implementation of ICML-2024 "Navigating Complexity: Toward Lossless Graph Condensation via Expanding Window Matching"☆25Jun 23, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆21Mar 20, 2026Updated 5 months ago
- Code for "A Data-Centric Approach To Generate Faithful and High Quality Patient Summaries with Large Language Models"☆17Jul 20, 2025Updated last year
- Codes and Pre-trained models for RAMM: Retrieval-augmented Biomedical Visual Question Answering with Multi-modal Pre-training [ACM MM 202…☆29Nov 2, 2023Updated 2 years ago
- [NeurIPS 2024 Datasets and Benchmark Track Oral] MedCalc-Bench: Evaluating Large Language Models for Medical Calculations☆95Dec 18, 2025Updated 8 months ago
- ToolQA, a new dataset to evaluate the capabilities of LLMs in answering challenging questions with external tools. It offers two levels …☆288Aug 19, 2023Updated 3 years ago
- A Python Natural Language Processing Toolkit for Electronic Health Record Texts☆13May 24, 2023Updated 3 years ago
- Synthetic QA generation for long documents.☆16Jul 22, 2022Updated 4 years ago
- Expert-Curated Oncology Reports to Advance Language Model Inference☆34Apr 17, 2024Updated 2 years ago
- Code repository for the framework to engage in clinical decision making task using the MIMIC-CDM dataset.☆49Jul 29, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- [Cell Patterns 2024] A comprehensive benchmark for COVID-19 predictive modeling using electronic health records in intensive care☆32May 24, 2026Updated 3 months ago
- The codes for our ACL'22 paper: PRBOOST: Prompt-Based Rule Discovery and Boosting for Interactive Weakly-Supervised Learning.☆36Mar 18, 2022Updated 4 years ago
- [NeurIPS 2022] Generating Training Data with Language Models: Towards Zero-Shot Language Understanding☆70Sep 18, 2022Updated 3 years ago
- [ML4H'25] m1: Unleash the Potential of Test-Time Scaling for Medical Reasoning in Large Language Models☆51Dec 21, 2025Updated 8 months ago
- [KDD 2020] This is the code repository for our KDD'20 paper STEAM: Self-Supervised Taxonomy Expansion with Mini-Paths.☆18Jul 22, 2020Updated 6 years ago
- Source code of MOLLEO☆57Jul 8, 2025Updated last year
- ☆44Aug 17, 2026Updated 2 weeks ago