Alternatives and similar repositories for documentation

Users that are interested in documentation are comparing it to the libraries listed below

• raamana / visualqc
  VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.
  ☆73Updated 2 months ago
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆70Updated last year
• NDAR / nda-tools
  Python package for interacting with NDA web services. Used to validate, submit, and download data to and from NDA.
  ☆61Updated 3 months ago
• nipreps / niworkflows
  Common workflows for MRI (anatomical, functional, diffusion, etc)
  ☆100Updated 2 weeks ago
• templateflow / templateflow
  The TemplateFlow Archive - A DataLad super-dataset
  ☆87Updated 3 weeks ago
• Qoala-T / QC
  Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
  ☆77Updated 4 years ago
• scilus / tractoflow
  TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity
  ☆60Updated 11 months ago
• preprocessed-connectomes-project / quality-assessment-protocol
  Scripts and documentation for the PCP's protocol for assessing data quality.
  ☆41Updated 3 years ago
• brainlife / ezbids
  A web service for semi-automated conversion of raw imaging data to BIDS
  ☆31Updated last month
• neurodesk / neurodesktop
  The plug-and-play, browser-accessible, containerised data analysis environment.
  ☆49Updated this week
• nighres / nighres
  Processing tools for high-resolution neuroimaging
  ☆71Updated 9 months ago
• bids-apps / freesurfer
  BIDS app wrapping recon-all from FreeSurfer
  ☆42Updated 3 weeks ago
• CoBrALab / RABIES
  fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/
  ☆45Updated last week
• Conxz / multiBrain
  A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!
  ☆96Updated 5 months ago
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆162Updated 2 weeks ago
• nipoppy / nipoppy
  Lightweight framework for neuroimaging-clinical data organization/processing
  ☆33Updated last week
• nipy / nitransforms
  a standalone fork of nipy/nibabel#656
  ☆33Updated 2 weeks ago
• ucl-pond / pySuStaIn
  Subtype and Stage Inference (SuStaIn) algorithm with an example using simulated data.
  ☆172Updated 3 weeks ago
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆68Updated 3 weeks ago
• bbfrederick / rapidtide
  rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data
  ☆84Updated this week
• nipreps / smriprep
  Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
  ☆149Updated last week
• CoBrALab / optimized_antsMultivariateTemplateConstruction
  A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
  ☆31Updated 2 weeks ago
• CoBrALab / MAGeTbrain
  Multiple Automatically Generated Templates brain segmentation algorithm
  ☆50Updated last year
• ncullen93 / neuroCombat
  Harmonizing neuroimaging data across scanners and sites
  ☆34Updated 5 years ago
• nipy / heudiconv
  Flexible DICOM conversion into structured directory layouts
  ☆264Updated 2 weeks ago
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆52Updated last year
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆71Updated last week
• kwagstyl / surface_tools
  Tools for mesh surface-based operations
  ☆36Updated 6 months ago
• dPys / PyNets
  A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning
  ☆123Updated last year
• cMadan / openMorph
  Curated list of open-access databases with human structural MRI data
  ☆129Updated 6 years ago