Alternatives and similar repositories for neurodesktop

Users that are interested in neurodesktop are comparing it to the libraries listed below

• nighres / nighres
  Processing tools for high-resolution neuroimaging
  ☆71Updated 8 months ago
• bids-apps / freesurfer
  BIDS app wrapping recon-all from FreeSurfer
  ☆42Updated 9 months ago
• nipreps / niworkflows
  Common workflows for MRI (anatomical, functional, diffusion, etc)
  ☆99Updated last week
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆69Updated last year
• scilus / tractoflow
  TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity
  ☆59Updated 10 months ago
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆70Updated last week
• JosePMarques / MP2RAGE-related-scripts
  MP2RAGE Scripts - T1 map correction & Background noise removal
  ☆64Updated 2 years ago
• nipreps / sdcflows
  Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes
  ☆42Updated last week
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆160Updated this week
• neurodesk / neurocommand
  A flexible, scalable, and easy to use data analysis environment for reproducible neuroimaging
  ☆40Updated this week
• brainlife / ezbids
  A web service for semi-automated conversion of raw imaging data to BIDS
  ☆31Updated 3 weeks ago
• raamana / visualqc
  VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.
  ☆73Updated last month
• HumanBrainED / NHP-BrainExtraction
  ☆39Updated 3 years ago
• Qoala-T / QC
  Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
  ☆77Updated 4 years ago
• layerfMRI / LAYNII
  Stand alone fMRI software suite for layer-fMRI analyses.
  ☆100Updated last month
• templateflow / templateflow
  The TemplateFlow Archive - A DataLad super-dataset
  ☆86Updated 2 months ago
• bbfrederick / rapidtide
  rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data
  ☆83Updated this week
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆66Updated this week
• khanlab / hippunfold
  BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)
  ☆59Updated last week
• neurodesk / neurocontainers
  The containers can be used in combination with our transparent singularity or neurocommand tool, that wrap the executables inside a conta…
  ☆30Updated last week
• spinicist / nanslice
  A Python implementation of 'dual-coding'
  ☆42Updated last year
• maartenmennes / ICA-AROMA
  ICA-AROMA Software Package: a data-driven method to identify and remove head motion-related artefacts from functional MRI data.
  ☆98Updated last year
• neurabenn / precon_all
  precon_all surface pipline
  ☆27Updated 2 months ago
• HALFpipe / HALFpipe
  ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
  ☆99Updated this week
• ncullen93 / neuroCombat
  Harmonizing neuroimaging data across scanners and sites
  ☆34Updated 5 years ago
• Aswendt-Lab / AIDAmri
  Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain
  ☆30Updated last week
• kwagstyl / surface_tools
  Tools for mesh surface-based operations
  ☆36Updated 5 months ago
• nipreps / nibabies
  fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI
  ☆33Updated last month
• Conxz / multiBrain
  A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!
  ☆95Updated 4 months ago
• Deep-MI / fsqc
  A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
  ☆63Updated this week