muscbridge / PyDesigner
A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k
☆28Updated 2 weeks ago
Alternatives and similar repositories for PyDesigner:
Users that are interested in PyDesigner are comparing it to the libraries listed below
- ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…☆53Updated last week
- Bash script to compute DTI-ALPS☆50Updated 2 months ago
- Computational Anatomy Toolbox for SPM12 or SPM25☆35Updated this week
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆69Updated this week
- The SHiVAi pipeline for preprocessing, AI-based segmentation, and reporting of cCVSD biomarkers from brain MRI images☆12Updated 3 weeks ago
- Scripts to prepare MP2RAGE for Freesurfer☆27Updated last year
- Segmentation tool for the delineation and volumetric quantification of the choroid plexus☆15Updated 3 weeks ago
- Weakly supervised perivascular spaces segmentation with salient guidance of Frangi filter☆13Updated last year
- Single Shell Free Water Elimination Model for Diffusion Tensor Imaging☆24Updated last year
- Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries☆38Updated 2 years ago
- multi atlas transfer tools for neuroimaging (maTT)☆64Updated 5 months ago
- Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM…☆23Updated last year
- niimath - a clone of fslmaths. Try the live demo:☆60Updated 4 months ago
- MP2RAGE Scripts - T1 map correction & Background noise removal☆57Updated 2 years ago
- ☆36Updated 3 years ago
- SPM implementation of https://github.com/JosePMarques/MP2RAGE-related-scripts☆10Updated last year
- Preprocessing of arterial spin labeling (ASL) data☆48Updated this week
- Segmentation of Choroid Plexus using Gaussian Mixture Model☆14Updated 3 weeks ago
- MATLAB/Octave GIfTI Library☆25Updated last month
- Matlab code for performing image reconstruction in MRI and performing the NORDIC denoising☆60Updated 6 months ago
- A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data☆63Updated 5 months ago
- Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps☆69Updated 9 months ago
- Support for CMRR multi-band pulse sequences☆58Updated last month
- mrQ_BoxJoinBox☆22Updated last year
- Reproduce the artice Hoy et al. 2014 Optimization of a free water elimination two-compartment model for diffusion tensor imaging. Neuroim…☆13Updated 6 years ago
- An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images☆50Updated 8 months ago
- Gradient Unwarping in Python☆35Updated 4 months ago
- ☆10Updated 4 years ago
- BIDS app wrapping recon-all from FreeSurfer☆41Updated 5 months ago
- Purifibre removes spurious streamlines from tractograms☆10Updated 3 years ago