ashawkey / volumentations
3D volume data augmentation package inspired by albumentations
☆79Updated 5 years ago
Alternatives and similar repositories for volumentations:
Users that are interested in volumentations are comparing it to the libraries listed below
- Library for 3D augmentations☆241Updated 4 months ago
- A loss function (Weighted Hausdorff Distance) for object localization in PyTorch☆90Updated 6 years ago
- ☆191Updated 3 years ago
- Code for our paper SAUNet: Shape Attentive U-Net for Interpretable Medical Image Segmentation. https://arxiv.org/pdf/2001.07645v3.pdf pub…☆96Updated 3 years ago
- [IEEE JBHI'21] Reinventing 2D Convolutions for 3D Images - 1 line of code to convert pretrained 2D models to 3D!☆167Updated 10 months ago
- A PyTorch implementation of EfficientNet☆167Updated last year
- An unsupervised (or self-supervised) loss function for binary image segmentation (TensorFlow)☆69Updated 3 years ago
- The implementation of 3D-UNet using PyTorch☆101Updated last week
- PyTorch Volume Models for 3D data☆51Updated 7 months ago
- A tool to do quick and dirty inspection of multichannel 3D data. I use it mainly to visualize batches for deep learning.☆51Updated 3 weeks ago
- matlab and python wrap of crf and dense crf, both 2d and 3d are supported☆169Updated 2 years ago
- EfficientNets in 3D variant for keras and TF.keras☆53Updated 3 years ago
- Implementation of Hausdorff loss function for DNN learning in segmentation tasks.☆64Updated 8 months ago
- Implementation of active contour loss function☆200Updated 4 years ago
- Volumetric MRI brain tumor segmentation using autoencoder regularization☆48Updated last year
- PyTorch implementation of HighRes3DNet☆49Updated last year
- Official Keras & PyTorch Implementation and Pre-trained Models for Semantic Genesis - MICCAI 2020☆81Updated 3 years ago
- Implementation of "Practical Window Setting Optimization for Medical Image Deep learning"☆42Updated 5 years ago
- Multi-Planar UNet for autonomous segmentation of 3D medical images☆190Updated last year
- [Medical Image Analysis 2019] Attentive Neural Cell Instance Segmentation☆47Updated 3 years ago
- A PyTorch implementation of the Probabilistic U-Net, applied to probabilistic glioma growth☆43Updated 5 years ago
- Tensorflow Code for "PHiSeg: Capturing Uncertainty in Medical Image Segmentation", Proc. MICCAI 2019☆125Updated 2 years ago
- Assessing Reliability and Challenges of Uncertainty Estimations for Medical Image Segmentation☆53Updated last year
- A PyTorch-based library for working with 3D and 2D convolutional neural networks, with focus on semantic segmentation of volumetric biome…☆163Updated last year
- A Python package for geometric transformations of images for data augmentation in deep learning☆64Updated 5 years ago
- This repository holds the code framework used in the paper Reg R-CNN: Lesion Detection and Grading under Noisy Labels. It is a fork of MI…☆51Updated 2 years ago
- Repository for the Medical Out-of-Distribution Analysis Challenge.☆61Updated 7 months ago
- Pytorch version of the HyperDenseNet deep neural network for multi-modal image segmentation☆78Updated 5 years ago
- [MICCAI'21 & MICCAI'20] A Codebase for Universal Lesion Detection (DeepLesion SOTA)☆47Updated 3 years ago
- ☆95Updated 5 years ago