SONNET: A self-guided ordinal regression neural network for segmentation and classification of nuclei in large-scale multi-tissue histology images
☆17Sep 15, 2021Updated 4 years ago
Alternatives and similar repositories for Sonnet
Users that are interested in Sonnet are comparing it to the libraries listed below
Sorting:
- Cell Graph Transformer for Nuclei Classification, AAAI 2024☆27Oct 8, 2024Updated last year
- NuLite - Lightweight and Fast Model for Nuclei Instance Segmentation and Classification☆30Jan 19, 2026Updated last month
- Exploring Unsupervised Cell Recognition with Prior Self-activation Maps (MICCAI 2023)☆13Oct 27, 2023Updated 2 years ago
- ☆15Dec 30, 2024Updated last year
- Benchmarking of deep learning and other segmentation methods for H&E images☆11Jul 6, 2023Updated 2 years ago
- ☆13May 31, 2023Updated 2 years ago
- Official PyTorch implementation of the TMI paper "Nucleus-aware Self-supervised Pretraining Using Unpaired Image-to-image Translation for…☆16Mar 13, 2024Updated last year
- ☆18Nov 16, 2023Updated 2 years ago
- NuInsSeg: A Fully Annotated Dataset for Nuclei Instance Segmentation in H&E-Stained Histological Images☆40Jul 15, 2024Updated last year
- [Scientific Data] The official code of "A Large-scale Synthetic Pathological Dataset for Deep Learning-enabled Segmentation of Breast Can…☆20Oct 3, 2023Updated 2 years ago
- [ECCV 2024 Oral] Knowledge-enhanced pretraining for computational pathology☆47Oct 1, 2025Updated 5 months ago
- This repository includes the codes and descriptions to create a fully annotated dataset of nuclei from cryosectioned histological samples…☆45Feb 8, 2023Updated 3 years ago
- Diffusion-based Data Augmentation for Nuclei Image Segmentation☆25Dec 5, 2024Updated last year
- Joint Modelling Histology and Molecular Markers for Glioma Classification☆12Jun 4, 2025Updated 8 months ago
- Pytorch Implement of Boundary-assisted Region Proposal Networks for Nucleus Segmentation☆18Jun 8, 2021Updated 4 years ago
- Iteratively Coupled Multiple Instance Learning☆24Nov 28, 2024Updated last year
- Pytorch implementation of NASDM: Nuclei-Aware Semantic Histopathology Image Generation Using Diffusion Models☆20May 9, 2024Updated last year
- Python 3 library for the augmentation & normalization of H&E images☆64Sep 12, 2022Updated 3 years ago
- Evaluation code for the PanNuke dataset☆29Oct 20, 2020Updated 5 years ago
- MICCAI-MLMI-2023: A Single-Point Prompt Network for Nuclei Image Segmentation (Boost SAM)☆30Oct 25, 2023Updated 2 years ago
- SPIDER: A multi-organ pathology dataset with expert annotations and pre-trained models for AI-driven research. Available on Hugging Face …☆41Apr 7, 2025Updated 10 months ago
- Feather - Lightweight supervised slide foundation models (ICML 2025)☆134Feb 5, 2026Updated 3 weeks ago
- ☆10Dec 17, 2019Updated 6 years ago
- DiagSet: a dataset for prostate cancer histopathological image classification☆39May 30, 2024Updated last year
- [CVPR 2024] Dynamic Graph Representation with Knowledge-aware Attention for Histopathology Whole Slide Image Analysis☆86Feb 3, 2025Updated last year
- Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024☆147Feb 22, 2025Updated last year
- Official repository of Benchmarking Self-Supervised Learning on Diverse Pathology Datasets☆94May 23, 2023Updated 2 years ago
- Encoder-Decoder Cell and Nuclei segmentation models☆97Nov 14, 2025Updated 3 months ago
- visualization tools for exon/junction coverage☆11Dec 30, 2019Updated 6 years ago
- ☆12Dec 9, 2022Updated 3 years ago
- An R package for annotation of circular RNAs☆11Mar 30, 2020Updated 5 years ago
- ☆11Jul 1, 2022Updated 3 years ago
- A Python package for plotting Kaplan-Meier survival curves☆11Jan 5, 2025Updated last year
- Minimal kernel for cortex m based microcontrollers.☆10Jun 14, 2025Updated 8 months ago
- ☆22Aug 17, 2025Updated 6 months ago
- ☆12Apr 28, 2018Updated 7 years ago
- A stable & generalizable GRPO method for AR image generation☆31Oct 1, 2025Updated 5 months ago
- A package for the analysis of Imaging Mass Cytometry data☆14Jan 21, 2026Updated last month
- This is the official repository for our CVPR 2023 paper 'Task-Specific Fine-Tuning via Variational Information Bottleneck for Weakly-Supe…☆91Apr 16, 2024Updated last year