A curated list of reproducible research case studies, projects, tutorials, and media
☆386Apr 1, 2026Updated last month
Alternatives and similar repositories for awesome-reproducible-research
Users that are interested in awesome-reproducible-research are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An awesome list of resources for reproducible research in R. Includes a table of comparison for different tools.☆17Dec 21, 2024Updated last year
- Notas Ecoinformáticas para la revista Ecosistemas | Ecoinformatics Notes for the journal Ecosistemas☆11Apr 7, 2026Updated 3 weeks ago
- Reproducible Science: what, why, how☆44Mar 5, 2019Updated 7 years ago
- A Gene Finder framework for Julia.☆16Jan 16, 2026Updated 3 months ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Apr 19, 2018Updated 8 years ago
- R bindings to html-tidy C interface☆14Aug 15, 2022Updated 3 years ago
- Build and maintain multiple custom conda environments all in one place.☆40Dec 3, 2024Updated last year
- "What They Forgot to Teach You About R" website / eBook☆437Updated this week
- 😎 A curated list of awesome resources for learning WebR, a version of the statistical language R compiled for the browser and Node.js us…☆86Mar 25, 2023Updated 3 years ago
- rrtools: Tools for Writing Reproducible Research in R☆717Jul 21, 2025Updated 9 months ago
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago
- Good Enough Practices in Scientific Computing☆23Apr 28, 2026Updated last week
- R package for Bayesian multi-state modelling of chronic disease burden data☆10Apr 28, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Create Interactive Image Comparators from R with the 'image-compare-viewer' Javascript Library☆15Mar 28, 2022Updated 4 years ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Feb 13, 2018Updated 8 years ago
- Template for living data workflow☆13Jan 30, 2019Updated 7 years ago
- A curated list of nextflow based pipelines☆625Jun 23, 2025Updated 10 months ago
- A simple comment CSS for linking in R markdown☆11Dec 8, 2018Updated 7 years ago
- A list of useful bioinformatics resources☆631Apr 11, 2026Updated 3 weeks ago
- Documentation of the Snakemake-Workflows project☆157Feb 2, 2022Updated 4 years ago
- A Jupyter Notebook extension for Docker☆15Sep 2, 2019Updated 6 years ago
- The Leek group guide to genomics papers☆502Nov 5, 2018Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Organize your project into a research website☆892Aug 19, 2025Updated 8 months ago
- Wrapper to protein secondary structure calculation packages☆13Apr 3, 2025Updated last year
- A template for creating modular shiny applications that meet academic standards and are reproducible☆31Apr 2, 2026Updated last month
- List of tools and resources related to the 10x Genomics GEMCode/Chromium system☆88Jan 7, 2026Updated 3 months ago
- Quarto shortcode to insert the current or last modified date/time☆30Feb 23, 2026Updated 2 months ago
- a minimal, scriptable genome browser for python☆54Dec 20, 2024Updated last year
- Training material: how and why to make a research compendium☆16Mar 3, 2022Updated 4 years ago
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆15Mar 27, 2026Updated last month
- Oxbow makes genomic data ready for high-performance analytics.☆153Mar 21, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated last year
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 6 years ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling☆13Nov 10, 2023Updated 2 years ago
- R package for easy creation of GNU Makefiles to aid a reproducible work flow for data analysis projects.☆39Jul 19, 2020Updated 5 years ago
- The uncompromising Snakemake code formatter☆189Updated this week
- A Rust library and command line tool for working with genomic ranges and their data.☆100May 29, 2024Updated last year