Alternatives and similar repositories for Quantitative-Big-Imaging-2018

Users that are interested in Quantitative-Big-Imaging-2018 are comparing it to the libraries listed below

• axondeepseg / axondeepseg
  Axon/Myelin segmentation using Deep Learning
  ☆123Updated 3 weeks ago
• neurodata / ardent
  Affine and Regularized DEformative Numeric Transform (ardent) is a Python package for performing image registration using LDDMM.
  ☆17Updated 5 years ago
• kmader / Quantitative-Big-Imaging-2019
  The material for the Quantitative Big Imaging course at ETHZ for the Spring Semester 2019
  ☆26Updated 5 years ago
• jaketmp / pyCompare
  Python module for generating Bland-Altman plots
  ☆37Updated 2 years ago
• dipy / cudipy
  cupy-accelerated DIPY
  ☆11Updated 4 years ago
• nipy / niwidgets
  Neuroimaging widgets for jupyter notebooks
  ☆87Updated 3 years ago
• plotly / dash-brain-surface-viewer
  Dash app for viewing brain surfaces saved as MNI files. Data from https://github.com/aces/brainbrowser
  ☆37Updated 3 years ago
• nipy / nilabels
  Tools to automate simple manipulations and measurements of medical images and segmentations in nifti format.
  ☆22Updated 7 months ago
• sbonaretti / pyKNEEr
  An image analysis workflow for open and reproducible research on femoral knee cartilage
  ☆33Updated last year
• dtward / image_lddmm_tensorflow
  Image mapping using the LDDMM algorithm, implemented in tensorflow
  ☆17Updated 4 years ago
• ericspod / Eidolon
  Biomedical Visualization and Analysis Framework
  ☆42Updated last year
• Project-MONAI / MONAIBootcamp2020
  Material for the 2020 MONAI Bootcamp
  ☆64Updated 4 years ago
• imglib / imglyb
  Connecting Java/ImgLib2 + Python/NumPy
  ☆30Updated 5 months ago
• biomedisa / biomedisa
  Biomedisa is a free and open-source application for segmenting 3D images such as CT and MRI scans, developed at The Australian National U…
  ☆56Updated last week
• funkey / nyroglancer
  jupyter notebook extension to visualize numpy arrays with the neuroglancer
  ☆28Updated 7 years ago
• seung-lab / neuroglancer
  WebGL-based viewer for volumetric data
  ☆24Updated 2 weeks ago
• davidssmith / DCEMRI.jl
  DCE MRI analysis in Julia
  ☆38Updated 4 years ago
• Slicer / SlicerNotebooks
  Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python
  ☆78Updated 3 years ago
• AllenCellModeling / czifile
  czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html
  ☆15Updated 2 months ago
• napari / napari.github.io
  website for the napari image viewer
  ☆47Updated this week
• jni / skan
  Python module to analyse skeleton (thin object) images
  ☆138Updated 3 months ago
• apeer-micro / apeer-ometiff-library
  Easily read and write ome-tiff images in python
  ☆28Updated last year
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• dani-lbnl / SC20_pyHPC
  pyHPC workshop
  ☆11Updated 3 years ago
• Jhsmit / PymageJ
  Python tools for ImageJ
  ☆13Updated 4 years ago
• adwanner / PyKNOSSOS
  PyKNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for high-throughput image annotation…
  ☆18Updated 5 years ago
• janelia-flyem / gala
  Automatic segmentation of electron microscopy volumes
  ☆77Updated 4 years ago
• Slicer / SlicerJupyter
  Extension for 3D Slicer that allows the application to be used from Jupyter notebook
  ☆258Updated last year
• darya-chyzhyk / confound_prediction
  Confound-isolating cross-validation approach to control for a confounding effect in a predictive model.
  ☆40Updated 6 years ago
• BrancoLab / imgreg2D
  2D image registration in python, using napari.
  ☆16Updated 4 years ago