Slicer / SlicerJupyterLinks
Extension for 3D Slicer that allows the application to be used from Jupyter notebook
☆258Updated last year
Alternatives and similar repositories for SlicerJupyter
Users that are interested in SlicerJupyter are comparing it to the libraries listed below
Sorting:
- Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python☆78Updated 3 years ago
- ☆89Updated last year
- An image analysis workflow for open and reproducible research on femoral knee cartilage☆33Updated last year
- Properly generate a 3D numpy array from a set of DICOM files.☆95Updated 2 years ago
- Slicer extensions index☆81Updated last week
- Website for NA-MIC Project Weeks☆92Updated this week
- Utilities for reading and writing files created by 3D Slicer☆41Updated 10 months ago
- Template to be used as a starting point for creating a custom 3D Slicer application☆65Updated 2 weeks ago
- Material for the 2020 MONAI Bootcamp☆64Updated 4 years ago
- An open-source, free comprehensive software that will allow biomedical scientists to precisely locate shape changes in their imaging stud…☆66Updated last week
- Client side integration example source code and libraries for AI-Assisted Annotation SDK☆321Updated last year
- A setup script to generate ITK Python Wheels☆63Updated this week
- Python package for DICOM-SEG medical segmentation file reading and writing☆85Updated 2 years ago
- Build, package, test, and run 3D Slicer and Slicer Extensions in Docker.☆67Updated this week
- Simple pure-python module for reading and writing nrrd files.☆124Updated 10 months ago
- best effort anonymization for medical images using python☆165Updated last week
- Extension to import microCT data and conduct 3D morphometrics in Slicer☆114Updated last week
- Multi-class U-Net for head CT segmentation☆34Updated 6 months ago
- Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: h…☆194Updated 2 years ago
- Data, notebooks, and articles associated with the RSNA AI Deep Learning Lab at RSNA 2021☆81Updated 3 years ago
- Awesome list of software that I use to do research in medical imaging.☆235Updated 5 years ago
- High-level DICOM abstractions for the Python programming language☆214Updated 2 weeks ago
- ☆74Updated 2 years ago
- This extension contains only a module with some tools to install PyTorch inside Slicer, using the best possible version.☆36Updated 6 months ago
- Materials for the 2021 MONAI Bootcamp☆110Updated 3 years ago
- An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images☆259Updated last week
- prostatecancer.ai is an AI-based, zero-footprint medical image viewer that can identify clinically significant prostate cancer.☆67Updated 3 years ago
- An open-source application for the analysis and visualization of segmented vasculature datasets☆126Updated last year
- 3D Slicer extension for cardiac analysis☆152Updated this week
- Recipes for common medical image segmentation tasks using 3D Slicer☆61Updated 3 years ago