Extension for 3D Slicer that allows the application to be used from Jupyter notebook
☆265Apr 22, 2026Updated 3 months ago
Alternatives and similar repositories for SlicerJupyter
Users that are interested in SlicerJupyter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Examples that illustrate how to use 3D Slicer via Jupyter notebooks in Python☆78Sep 20, 2022Updated 3 years ago
- Build, package, test, and run 3D Slicer and Slicer Extensions in Docker.☆76Updated this week
- Slicer extension for TOMAAT☆17Jun 18, 2024Updated 2 years ago
- Recipes for common medical image segmentation tasks using 3D Slicer☆64Jul 26, 2022Updated 4 years ago
- Jupyter Interactive Widgets library for 3-D mesh analysis☆15Jun 17, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Materials for the yearly PerkLab bootcamp course☆98Jul 29, 2025Updated 11 months ago
- Website for NA-MIC Project Weeks☆93Updated this week
- An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point …☆622Mar 10, 2026Updated 4 months ago
- Extension to import microCT data and conduct 3D morphometrics in Slicer☆118Updated this week
- Multi-platform, free open source software for visualization and image computing.☆2,553Updated this week
- Slicer extensions index☆86Updated this week
- Book of 3D Slicer.☆12Feb 12, 2018Updated 8 years ago
- Simple Scripted Module to batch process patients in 3D Slicer☆19Jun 26, 2025Updated last year
- This extension contains only a module with some tools to install PyTorch inside Slicer, using the best possible version.☆38Jul 20, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Example Application for Slicer Customization - Generated from KitwareMedical/SlicerCustomAppTemplate☆16Mar 9, 2023Updated 3 years ago
- Extension for 3D Slicer containing various tools for module development and debugging☆34Jun 3, 2026Updated last month
- Client side integration example source code and libraries for AI-Assisted Annotation SDK☆320Apr 23, 2024Updated 2 years ago
- Vascular Tree Synthesis Software. You will need CMake and ITK to run VascuSynth. Read the paper in the Insight Journal for instructions…☆12Jan 24, 2018Updated 8 years ago
- Template to be used as a starting point for creating a custom 3D Slicer application☆70Jul 21, 2026Updated last week
- An image analysis workflow for open and reproducible research on femoral knee cartilage☆34Jun 21, 2024Updated 2 years ago
- Versatile tree-viewer/filebrowser widget, built on top of regular-table☆14Nov 12, 2023Updated 2 years ago
- Many additional segmentation tools for 3D Slicer's Segment Editor☆53Jun 24, 2026Updated last month
- 3-D Scientific visualization using ThreeJS☆22May 2, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Building a PyPI wheel for xeus-python☆13Updated this week
- 3D Slicer extension for streamlined annotation of images☆11Apr 23, 2024Updated 2 years ago
- Notes and experiments in Jupyter dashboarding☆16Apr 17, 2021Updated 5 years ago
- An intuitive platform for deploying the latest discoveries in healthcare AI to everybody's phones. Powered by PyTorch!☆10Aug 25, 2020Updated 5 years ago
- Stores the MHub models dockerfiles and scripts.☆11Apr 30, 2026Updated 2 months ago
- MONAI Label is an intelligent open source image labeling and learning tool.☆871Updated this week
- Slicer modules that support web services and web applications☆25May 22, 2023Updated 3 years ago
- Create volumetric mesh from segmentation using Cleaver2 or TetGen☆34Jun 27, 2024Updated 2 years ago
- Convert 3D NIfTI images (and other formats supported by ITK) to DICOM 2D series☆87Nov 16, 2016Updated 9 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Multi-lingual medical image registration library☆537Jun 15, 2023Updated 3 years ago
- An extension to 3D Slicer to support quantitative imaging and image-guided interventions research in prostate cancer.☆23May 11, 2026Updated 2 months ago
- 🔗 minimalist ipywidget to interface with any Python vtkRenderWindow☆104Sep 30, 2022Updated 3 years ago
- Simple python code to transfer segmented nii.gz file to a list of stl files based on the labels☆10Jan 11, 2022Updated 4 years ago
- Tool for robust segmentation of >100 important anatomical structures in CT and MR images☆2,903Updated this week
- Python package for writing 5D numpy arrays to HDF5 files readable by both Imaris and BigDataViewer☆12Aug 13, 2021Updated 4 years ago
- Jupyter kernel for a simple calculator☆20Dec 16, 2024Updated last year