Alternatives and similar repositories for ngs-notebooks

Users that are interested in ngs-notebooks are comparing it to the libraries listed below

• roblanf / phypapers
  How to set up a literature bot on Bluesky
  ☆82Updated 9 months ago
• knightlab-analyses / american-gut-analyses
  ☆15Updated 6 years ago
• trvrb / dynamics-practical
  Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data
  ☆32Updated 11 years ago
• rnabioco / practical-data-analysis
  Short course using RStudio for biological data analysis
  ☆14Updated 2 years ago
• shenwei356 / easy_qsub
  Easily submitting multiple PBS jobs or running local jobs in parallel. Multiple input files supported.
  ☆28Updated 2 years ago
• mjsull / HapFlow
  Visualise interstrain recombination from environmental samples.
  ☆26Updated 6 years ago
• cjlee112 / pygr
  Python graph database framework for bioinformatics
  ☆93Updated 3 years ago
• datacarpentry / R-genomics
  Lesson on data analysis and visualization in R for genomics
  ☆43Updated 6 years ago
• danknights / mwas
  Perform microbiome-wide association studies with a variety of models
  ☆17Updated 8 years ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated last week
• bendmorris / taxiphy
  Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.
  ☆16Updated 9 years ago
• jdrudolph / uniprot
  command-line and python interface to the uniprot database
  ☆10Updated 9 years ago
• kyclark / bioinformatics_primer
  Bioinformatics with Unix, bash, Make, Python, and parallel
  ☆22Updated 4 years ago
• maasha / BioDSL
  BioDSL (pronounced Biodiesel) is a Domain Specific Language for creating bioinformatic analysis workflows.
  ☆16Updated 6 years ago
• neilfws / utils4bioinformatics
  Little code snippets that do (hopefully) useful things
  ☆23Updated last year
• clauswilke / proteinER
  Supporting code for the paper "Measuring evolutionary rates of proteins in a structural context"
  ☆13Updated 6 years ago
• kbroman / qtl
  R/qtl: A QTL mapping environment
  ☆84Updated 9 months ago
• biocore / calour
  exploratory and interactive microbiome analyses based on heatmaps
  ☆27Updated 4 months ago
• AstraZeneca / detectIS
  A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data
  ☆12Updated 2 years ago
• RobersonLab / motif_scraper
  Tool for finding matches to degenerate sequence motifs in FASTA files.
  ☆13Updated last year
• scikit-bio / scikit-bio-cookbook
  Recipes for bioinformatics analyses with scikit-bio
  ☆42Updated 8 years ago
• fomightez / sequencework
  programs and scripts, mainly python, for analyses related to nucleic or protein sequences
  ☆24Updated 2 months ago
• biocore / emperor
  Emperor a tool for the analysis and visualization of large microbial ecology datasets
  ☆54Updated last year
• mfiers / Moa
  Lightweight workflows in bioinformatics:
  ☆24Updated 10 years ago
• datacarpentry / shell-genomics
  Introduction to the Command Line for Genomics
  ☆65Updated this week
• ajrichards / htsint
  A Python library to work with high-throughput sequencing data in the context of data integration
  ☆14Updated 8 years ago
• slundberg / ChromNet.jl
  Integrates any BAM/BED file into the ChromNet group graphical model.
  ☆8Updated 6 years ago
• Hypercubed / DEIVA
  Interactive Visual Analysis of differential gene expression test results
  ☆22Updated 8 years ago
• olgabot / abi2fastq
  abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ
  ☆11Updated 7 years ago
• soumitag / SLIDE
  A visualization tool for Systems-Level Interactive Data Exploration
  ☆12Updated 3 years ago