ngs-docs / ngs-notebooks

Related projects ⓘ

Alternatives and complementary repositories for ngs-notebooks

• medvir / VirMet
  Set of tools for viral metagenomics.
  ☆14Updated last year
• fls-bioinformatics-core / genomics
  Scripts, utilities and programs for genomic bioinformatics.
  ☆81Updated 9 months ago
• peterjc / picobio
  Miscellaneous Bioinformatics scripts etc mostly in Python
  ☆45Updated 2 weeks ago
• mjsull / HapFlow
  Visualise interstrain recombination from environmental samples.
  ☆26Updated 5 years ago
• sanger-pathogens / companion
  This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
  ☆21Updated 3 years ago
• dib-lab / screed
  a simple read-only sequence database, designed for short reads
  ☆64Updated 9 months ago
• percyfal / snakemakelib
  Snakemake library for bioinformatics programs, with a focus on next-generation sequencing
  ☆22Updated 8 years ago
• trvrb / dynamics-practical
  Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data
  ☆32Updated 11 years ago
• gogetdata / ggd-cli
  The command-line interface to GGD
  ☆42Updated 2 years ago
• liyao001 / BioQueue
  A novel pipeline framework to accelerate bioinformatics analysis
  ☆29Updated last year
• mfiers / Moa
  Lightweight workflows in bioinformatics:
  ☆23Updated 10 years ago
• biocore / emperor
  Emperor a tool for the analysis and visualization of large microbial ecology datasets
  ☆52Updated 10 months ago
• tlawrence3 / FAST
  FAST: Fast Analysis of Sequences Toolbox
  ☆31Updated 5 years ago
• cancerit / cgpPindel
  Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel
  ☆28Updated 2 months ago
• ngs-docs / ngs-scripts
  scripts!
  ☆11Updated 11 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆32Updated last year
• clintval / genome-browser
  A lightweight Python graphing API for genomic features
  ☆15Updated 2 years ago
• mdshw5 / hamstring
  Tools for generating and decoding error-correcting DNA barcodes
  ☆16Updated 2 years ago
• nilesh-tawari / ChronQC
  Manuscript describing ChronQC is now available online in Bioinformatics
  ☆17Updated 5 years ago
• bgruening / coding_for_big_data
  X things you should take into consideration if you code for big data analysis
  ☆24Updated 6 years ago
• splatlab / squeakr
  Squeakr: An Exact and Approximate k -mer Counting System
  ☆85Updated 9 months ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆84Updated 6 years ago
• epruesse / ymp
  Flexible omics pipeline
  ☆18Updated 4 months ago
• ukhsa-collaboration / PHEnix
  Public Health England SNP calling pipeline.
  ☆36Updated 6 years ago
• nf-core / gwas
  UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies
  ☆22Updated last month
• johanneskoester / alpaca
  ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…
  ☆23Updated this week
• UMCUGenetics / IAP
  Illumina analysis pipeline
  ☆14Updated 4 years ago
• seqeralabs / wave-cli
  Command line tool for Wave containers provisioning service
  ☆13Updated last month
• shenwei356 / easy_qsub
  Easily submitting multiple PBS jobs or running local jobs in parallel. Multiple input files supported.
  ☆28Updated last year
• seandavi / SRAdb
  Git mirror of Bioconductor SRAdb package
  ☆21Updated 6 years ago