evoldoers / biomake
GNU-Make-like utility for managing builds and complex workflows
☆101Updated 10 months ago
Related projects: ⓘ
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 7 months ago
- Bayesian co-estimation of phylogenies and multiple alignments via MCMC☆46Updated this week
- guix packages for bioinformatics software☆22Updated 7 months ago
- Bioinformatics pipelines with Haskell and Shake☆55Updated 5 years ago
- A collection of bioinformatics file format specimens to test against☆38Updated 4 years ago
- GeneNetwork (2nd generation)☆34Updated this week
- reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)☆48Updated 5 years ago
- ☆73Updated 5 years ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆80Updated 6 months ago
- ☆11Updated this week
- De Bruijn graphs in Rust☆63Updated last month
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated 6 months ago
- An efficient index for the colored, compacted, de Bruijn graph☆107Updated 4 months ago
- The D4 Quantitative Data Format☆153Updated 3 weeks ago
- GFA parser in Rust☆29Updated last year
- NGLess: NGS with less work☆142Updated last month
- fast, reliable and handy demultiplexing tool for fastx files☆14Updated 5 months ago
- ☆57Updated 2 years ago
- Benchmarking programming languages/implementations for common tasks in Bioinformatics☆175Updated 2 years ago
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆116Updated 3 years ago
- Deprecated☆100Updated 5 years ago
- LAMBDA – the Local Aligner for Massive Biological DatA☆77Updated 3 weeks ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆124Updated 6 months ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆83Updated 7 years ago
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆116Updated 7 months ago
- A GPU-friendly implementation of SpliceAI☆9Updated last year
- A genomic minhashing implementation in Rust☆92Updated 8 months ago
- NBDC/DBCLS BioHackathon 2015☆8Updated 4 years ago
- A library to build and execute typed scientific workflows☆46Updated 4 months ago
- Mulled - Automatized Containerized Software Repository☆65Updated 6 months ago