evoldoers / biomakeLinks
GNU-Make-like utility for managing builds and complex workflows
☆107Updated last year
Alternatives and similar repositories for biomake
Users that are interested in biomake are comparing it to the libraries listed below
Sorting:
- Bayesian co-estimation of phylogenies and multiple alignments via MCMC☆47Updated 2 weeks ago
- reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)☆48Updated 6 years ago
- guix packages for bioinformatics software☆23Updated last year
- GeneNetwork (2nd generation)☆35Updated last week
- Bioinformatics pipelines with Haskell and Shake☆56Updated 5 years ago
- Workflows written in common workflow language (CWL)☆14Updated 6 years ago
- Convenience function for quick and dirty data analysis☆69Updated 7 years ago
- Basic, no assumptions, multi-pileup☆24Updated 11 years ago
- NGLess: NGS with less work☆149Updated 4 months ago
- Explore and analyze biological sequence data☆16Updated 11 months ago
- fast, reliable and handy demultiplexing tool for fastx files☆14Updated 2 months ago
- Concise Common Workflow Language☆28Updated 4 months ago
- mirror of GNU Datamash. Send questions/comments/bugs to bug-datamash@gnu.org☆75Updated 3 months ago
- GFA parser in Rust☆31Updated 2 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 4 months ago
- A collection of bioinformatics file format specimens to test against☆47Updated 5 years ago
- A library for GNU make to schedule rules as jobs with qsub or sbatch☆11Updated 12 years ago
- Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)☆58Updated 2 years ago
- A flexible, pragmatic workflow tool.☆32Updated last month
- a simple lightweight workflow engine for data analysis scripting☆11Updated 5 years ago
- Python interface for SIMD Smith-Waterman Library☆38Updated 3 years ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆81Updated last year
- A library to build and execute typed scientific workflows☆48Updated 6 months ago
- Fast and flexible tool for reading, modifying and writing biological sequences☆18Updated 2 weeks ago
- An efficient index for the colored, compacted, de Bruijn graph☆111Updated 9 months ago
- Probabilistic HLA typing☆35Updated 5 years ago
- A GPU-friendly implementation of SpliceAI☆11Updated 2 years ago
- Benchmarking programming languages/implementations for common tasks in Bioinformatics☆185Updated 3 years ago
- a cythonized, extended version of the interval search tree in bx☆30Updated 6 years ago
- ☆74Updated 6 years ago