evoldoers / biomakeLinks
GNU-Make-like utility for managing builds and complex workflows
☆110Updated 2 years ago
Alternatives and similar repositories for biomake
Users that are interested in biomake are comparing it to the libraries listed below
Sorting:
- reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)☆48Updated 7 years ago
- Workflows written in common workflow language (CWL)☆14Updated 6 years ago
- Bayesian co-estimation of phylogenies and multiple alignments via MCMC☆48Updated last week
- NGLess: NGS with less work☆151Updated 8 months ago
- Basic, no assumptions, multi-pileup☆24Updated 11 years ago
- Explore and analyze biological sequence data☆17Updated last year
- A flexible, pragmatic workflow tool.☆33Updated 6 months ago
- A collection of bioinformatics file format specimens to test against☆47Updated 5 years ago
- A command line tool that uses a Boolean calculus of calendars for computing availability (currently supports Google Calendar API)☆25Updated 4 years ago
- guix packages for bioinformatics software☆23Updated last year
- A library to build and execute typed scientific workflows☆48Updated last month
- A library for GNU make to schedule rules as jobs with qsub or sbatch☆11Updated 12 years ago
- Bioinformatics pipelines with Haskell and Shake☆56Updated 6 years ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆31Updated 9 years ago
- GeneNetwork (2nd generation)☆37Updated this week
- Probabilistic HLA typing☆35Updated 6 years ago
- Parallel Block GZIP☆50Updated 9 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Updated 9 months ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆82Updated last year
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 9 years ago
- a simple lightweight workflow engine for data analysis scripting☆11Updated 6 years ago
- mirror of GNU Datamash. Send questions/comments/bugs to bug-datamash@gnu.org☆77Updated last week
- Mulled - Automatized Containerized Software Repository☆66Updated last year
- Deprecated☆100Updated 6 years ago
- A web wrapper for GeneValidator☆11Updated 4 years ago
- ☆50Updated last month
- Wiki form of BLAST documentation from NCBI☆16Updated 8 years ago
- Single-Cell RNA-seq pseudo-aligner☆52Updated last year
- k8 Javascript shell☆158Updated last week
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago