Python tools for epidemiology
☆144Jul 6, 2023Updated 2 years ago
Alternatives and similar repositories for epipy
Users that are interested in epipy are comparing it to the libraries listed below
Sorting:
- Tutorial in Python targeted at Epidemiologists. Will discuss the basics of analysis in Python 3☆178Nov 20, 2022Updated 3 years ago
- Code and Word2Vec embeddings of LOINC codes for KDD 2019 DSHealth paper "Evaluation of Embeddings of Laboratory Test Codes for Patients a…☆11Jun 13, 2024Updated last year
- A Bayesian spatio-temporal interaction model for epidemiology.☆25Oct 28, 2019Updated 6 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Mar 26, 2020Updated 5 years ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Jan 5, 2017Updated 9 years ago
- Epidemic Modeling for Everyone☆294Apr 14, 2025Updated 10 months ago
- Repository for the R for Epidemiology book☆29Dec 31, 2025Updated 2 months ago
- Library for indexing VCF files for random access searches by rsID☆17Updated this week
- AWS lambda S3 + rust-htslib: A serverless bioinformatics example☆14Jun 7, 2022Updated 3 years ago
- Diagnostics for confounding of time-varying and other joint exposures☆11Dec 12, 2022Updated 3 years ago
- Differential Mutation Analysis☆11May 24, 2020Updated 5 years ago
- R Package - Dynamical Systems Approach to Infectious Disease Epidemiology☆26Jan 22, 2024Updated 2 years ago
- Add editing UI and other power-user features to Datasette.☆14Mar 4, 2023Updated 3 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 8 years ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- This repository contains codes for Timeline model☆10Dec 18, 2018Updated 7 years ago
- An R package with Dynamic Models of infectious diseases☆30Nov 13, 2024Updated last year
- paplot creates various dynamic and interactive reports for cancer genome analysis.☆26Feb 1, 2023Updated 3 years ago
- A simulator of malaria epidemiology and control☆84Feb 25, 2026Updated last week
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Dec 4, 2018Updated 7 years ago
- We present a customizable computational tool, PathSeq2.0, to enable the discovery and identification of microbial sequences in metagenomi…☆12Jan 20, 2018Updated 8 years ago
- A methodological framework for health impact projections under climate change scenarios☆13Apr 16, 2025Updated 10 months ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- An R package for working with the Ecological Database of the World's Insect Pathogens (EDWIP)☆14Jan 15, 2025Updated last year
- ☆13Jun 21, 2017Updated 8 years ago
- ESTIMATE tumor infiltration, the tidy way☆17Aug 22, 2023Updated 2 years ago
- Nilearn tutorials for OHBM 2016 educational course☆13Jul 13, 2016Updated 9 years ago
- Query GitHub API v4 using GraphQL☆15Dec 16, 2017Updated 8 years ago
- Jupyter notebook for the application of convolutional neural nets to toy DNA sequence data☆15Aug 25, 2021Updated 4 years ago
- Structural Variation breakpoint discovery via adaptive learning☆16Jul 6, 2023Updated 2 years ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆59Oct 29, 2023Updated 2 years ago
- A pattern focusing on how to use scikit learn and python in Watson Studio to predict opioid prescribers based off of a 2014 kaggle datase…☆36Feb 28, 2020Updated 6 years ago
- A collection of htmlwidgets handy for epidemiology, etc.☆13Jul 5, 2015Updated 10 years ago
- SolveBio Python bindings☆20Feb 12, 2026Updated 3 weeks ago
- A Python toolkit for dimensionality reduction quality assessment☆19Oct 23, 2022Updated 3 years ago
- Parallel Genomic Analysis Toolkit☆14Feb 11, 2019Updated 7 years ago
- Domain-Specific Modeling for Epidemiology☆52Feb 23, 2026Updated last week
- R package for extracting mutation signatures from a list of somatic mutations☆37Aug 9, 2019Updated 6 years ago