☆29Jul 15, 2023Updated 2 years ago
Alternatives and similar repositories for Perseus
Users that are interested in Perseus are comparing it to the libraries listed below
Sorting:
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆39Nov 10, 2023Updated 2 years ago
- ETL-CDMBuilder is a repo containing a .NET Core application to perform ETL to OMOP CDM for multiple databases☆54Jan 28, 2026Updated last month
- This is an R package that implements a library of standard queries that run against the OMOP-CDM.☆18Jun 7, 2024Updated last year
- CDM Builder leveraging AWS Lambda☆20Updated this week
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆29May 28, 2021Updated 4 years ago
- Virtual Machine containing SynPUF data in OMOP CDM, a RDBS including query client, WebAPI, ATLAS, R and Python.☆58Mar 7, 2021Updated 5 years ago
- Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.☆108May 28, 2024Updated last year
- ☆32Jul 2, 2018Updated 7 years ago
- Automation code and documentation for standing up the OHDSI toolstack in an AWS environment☆76May 16, 2023Updated 2 years ago
- Characterizing Health Associated Risks, and Your Baseline Disease In SARS-COV-2 (CHARYBDIS) - a study to describe the baseline demographi…☆19Jul 28, 2021Updated 4 years ago
- Course materials for OHDSI ETL tutorial☆54Oct 7, 2025Updated 5 months ago
- [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM☆38Jan 8, 2026Updated 2 months ago
- Semantic query and text mining tool☆21Oct 31, 2023Updated 2 years ago
- Collaborative NLP annotation tool supporting enterprise authentication, inter-annotator statistics, active learning☆14Mar 5, 2023Updated 3 years ago
- ☆17Sep 14, 2018Updated 7 years ago
- An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/☆109Mar 28, 2024Updated last year
- Dashboards showing intrinsic meta data for the OMOP-CDM databases in the EHDEN data network☆14Feb 12, 2026Updated last month
- ☆13Aug 6, 2019Updated 6 years ago
- Streamlined Data Mapping to OMOP☆21Mar 10, 2026Updated last week
- Workproducts to ETL CMS datasets into OMOP Common Data Model☆103Mar 19, 2022Updated 4 years ago
- tablefaker is a versatile Python package that enables effortless generation of realistic yet synthetic table data and save in CSV, Parque…☆15Updated this week
- Health Analytics Data-to-Evidence Suite (HADES): A collection of R packages for performing analytics against the Common Data Model.☆27Mar 6, 2026Updated 2 weeks ago
- ☆10May 26, 2022Updated 3 years ago
- A package supporting the conversion from Synthea CSV to OMOP CDM☆121Feb 21, 2025Updated last year
- The Book of OHDSI repository☆122Sep 16, 2024Updated last year
- Strips useless pages from TU Wien PDFs☆12Jun 1, 2023Updated 2 years ago
- Oncology Working Group Repository☆61Dec 31, 2025Updated 2 months ago
- An NLP pipeline for COVID-19 surveillance used in the Department of Veterans Affairs Biosurveillance.☆15Oct 20, 2022Updated 3 years ago
- An R package for performing various cohort diagnostics.☆49Feb 4, 2026Updated last month
- Benchmark Datasets for BioNLP Tasks☆17May 7, 2025Updated 10 months ago
- Transform the OMOP model to graph model☆27Dec 13, 2024Updated last year
- A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds…☆53Oct 13, 2025Updated 5 months ago
- ETL Tool for converting datasets to OMOP CDM☆36Nov 24, 2022Updated 3 years ago
- Leaf Clinical Data Explorer☆100Nov 3, 2025Updated 4 months ago
- ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data☆307Feb 5, 2026Updated last month
- An ETL pipeline to transform your EMP data to OMOP.☆16Oct 15, 2025Updated 5 months ago
- Code to study the generalisability of benchmark models on non-stationary EHRs.☆14Aug 7, 2019Updated 6 years ago
- CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks☆45Dec 9, 2025Updated 3 months ago
- kmdata: A Database of Reconstructed Individual Patient Level Data from 153 Oncology Clinical Trials☆15May 27, 2025Updated 9 months ago