Alternatives and similar repositories for computational-project-cookie-cutter

Users that are interested in computational-project-cookie-cutter are comparing it to the libraries listed below

• Reproducible-Science-Curriculum / rr-init

  View on GitHub
  Research project initialization and organization following reproducible research guidelines
  ☆81Dec 12, 2014Updated 11 years ago
• multimeric / Fwrappe

  View on GitHub
  Text Wrapping around Figures in Quarto
  ☆11Dec 27, 2024Updated last year
• choldgraf / jupyterblog

  View on GitHub
  A helper repository for converting Jupyter notebooks into a wordpress-friendly format
  ☆12Dec 11, 2016Updated 9 years ago
• dewshr / NCBI-GenBank-file-parser

  View on GitHub
  This program can be used to parse the NCBI GenBank file to create a tabulated csv file.
  ☆10Mar 4, 2019Updated 6 years ago
• bgruening / docker-ipython-notebook

  View on GitHub
  IPython running in a docker container. This image can be used to integrate IPython into Galaxy
  ☆17Mar 15, 2016Updated 9 years ago
• ClevelandClinicQHS / projects

  View on GitHub
  projects
  ☆31Aug 6, 2021Updated 4 years ago
• kmlawson / ZotDevon

  View on GitHub
  NO LONGER FUNCTIONAL Script for Zotero->DEVONthink import
  ☆15Jan 13, 2015Updated 11 years ago
• ISA-tools / biopy-isatab

  View on GitHub
  Python parser for ISAtab, a biological file format for experimental metadata
  ☆16Nov 24, 2016Updated 9 years ago
• klarman-cell-observatory / Perturb-CITE-seq

  View on GitHub
  ☆15Jun 2, 2022Updated 3 years ago
• rstudio / shinycoreci-apps

  View on GitHub
  SUPERSEDED - Apps for Shiny continuous integration testing
  ☆37Mar 30, 2023Updated 2 years ago
• topepo / tidyAPM

  View on GitHub
  tidymodels code for Applied Predictive Modeling
  ☆38Mar 16, 2021Updated 4 years ago
• nacnudus / spreadsheet-munging-strategies

  View on GitHub
  A book about munging complex spreadsheets in R with tidyxl and unpivotr
  ☆22Nov 23, 2021Updated 4 years ago
• janepipistrelle / bacterial_GWAS_tutorial

  View on GitHub
  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop
  ☆18Feb 12, 2016Updated 10 years ago
• insightsengineering / cardx

  View on GitHub
  R Package to Supplement ARD Functions Found in {cards}
  ☆20Updated this week
• sarbal / EGAD

  View on GitHub
  Gene network analysis
  ☆19Dec 2, 2022Updated 3 years ago
• fperez / reprosw

  View on GitHub
  Lecture notes (in IPython Notebook format) on Reproducible Science And Modern Scientific Software
  ☆38Nov 13, 2015Updated 10 years ago
• data-cleaning / errorlocate

  View on GitHub
  Find and replace erroneous fields in data using validation rules
  ☆22Dec 10, 2025Updated 2 months ago
• AndersenLab / IBiS-Bootcamp

  View on GitHub
  ☆40Sep 14, 2016Updated 9 years ago
• rubenarslan / repro_web_stack

  View on GitHub
  The stack I use to make reproducible reports of my statistical analyses
  ☆21Jan 18, 2018Updated 8 years ago
• ngs-docs / 2015-nov-adv-rna

  View on GitHub
  ☆18Nov 16, 2015Updated 10 years ago
• jduckles / dsskills

  View on GitHub
  A skills matrix for Applied Data Science in Research
  ☆44Sep 5, 2021Updated 4 years ago
• Daniel-Mietchen / events

  View on GitHub
  Materials related to events I might attend, and to talks I am giving
  ☆24Oct 27, 2025Updated 3 months ago
• r4ds / mastering_shiny_book_solutions

  View on GitHub
  https://mastering-shiny-solutions.org
  ☆19Feb 8, 2023Updated 3 years ago
• matthew-brett / gitwash

  View on GitHub
  Workflow using git
  ☆47Dec 5, 2025Updated 2 months ago
• topepo / sdss-2019

  View on GitHub
  Slides and code for the "Modeling in the Tidyverse" short course on Wednesday, May 29 2019 at SDSS (Symposium on Data Science and Statist…
  ☆24Jun 18, 2020Updated 5 years ago
• vjcitn / CSHstats

  View on GitHub
  R vignettes/pkgdown for elementary statistics for a summer course
  ☆14Jan 9, 2025Updated last year
• ddsjoberg / starter

  View on GitHub
  A package to help get new projects started with templates
  ☆27Oct 15, 2024Updated last year
• marius10p / NeuralDataScienceCSHL2019

  View on GitHub
  Coding exercises for Neural Data Science at CSHL in 2019
  ☆31May 9, 2020Updated 5 years ago
• iquizoo / tarflow.iquizoo

  View on GitHub
  Setup "targets" Workflows for "iquzoo" Data Processing
  ☆10Jun 23, 2025Updated 7 months ago
• tlverse / causalglm

  View on GitHub
  Interpretable and model-robust causal inference for heterogeneous treatment effects using generalized linear working models with targeted…
  ☆27Apr 7, 2022Updated 3 years ago
• DeclareDesign / DesignLibrary

  View on GitHub
  Library of Research Designs
  ☆30Sep 10, 2025Updated 5 months ago
• ggobi / ggobi

  View on GitHub
  High dimensional data vis
  ☆28Jul 28, 2024Updated last year
• joshuaschwab / ltmle

  View on GitHub
  Longitudinal Targeted Maximum Likelihood Estimation package
  ☆27Apr 17, 2023Updated 2 years ago
• choldgraf / write-ups

  View on GitHub
  Write ups about computational stuff, how-tos, and explanations
  ☆23Nov 30, 2016Updated 9 years ago
• kevinushey / etc

  View on GitHub
  Scripts, dot files, and other things that make my programming life a happy one
  ☆33Feb 7, 2026Updated last week
• vsoch / scif

  View on GitHub
  scientific filesystem: a filesystem organization for scientific software and metadata
  ☆35Jan 26, 2024Updated 2 years ago
• pycam / python-intro

  View on GitHub
  Original materials for the "Introduction to Solving Biological Problems with Python" 2 days course
  ☆10Jun 25, 2018Updated 7 years ago
• egarpor / goffda

  View on GitHub
  Goodness-of-fit tests for functional data analysis. Software companion for "A goodness-of-fit test for the functional linear model with f…
  ☆10Oct 14, 2023Updated 2 years ago
• tszalay / poreseq

  View on GitHub
  Error correction and variant calling algorithm for nanopore sequencing
  ☆26Apr 23, 2016Updated 9 years ago