cbcrg / docker-benchmarks
A benchmarks of genomic pipelines running in Docker containers
☆21Updated 9 years ago
Related projects: ⓘ
- BigDataScript: Scirpting language for big data☆92Updated 3 years ago
- RNA mapping pipeline☆18Updated 6 years ago
- ☆20Updated 8 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 8 years ago
- An object store for scientific data☆51Updated 3 years ago
- workflow and resource management system for bioinformatics data analysis☆69Updated 3 years ago
- Isaac Genome Alignment Software☆37Updated 9 years ago
- Defunct. Use https://github.com/Linuxbrew/docker☆14Updated 8 years ago
- Streaming fragment assignment and quantification for high-throughput sequencing.☆36Updated 4 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Deprecated☆100Updated 5 years ago
- ☆13Updated this week
- Write-once-read-many table for large datasets.☆28Updated 11 months ago
- Simple tokenised template system for SGE☆10Updated last year
- Python client for GA4GH htsget protocol☆15Updated last year
- High performance Workflow Runner☆30Updated this week
- reference-guided aligner for next-generation sequencing technologies☆55Updated 8 years ago
- This repository contains FAQs (Frequently Asked Questions) for genome in a bottle project☆10Updated 5 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Updated 9 years ago
- MSKCC cBio cluster documentation☆12Updated 7 years ago
- Distributed job execution application built for Galaxy☆37Updated last month
- Predict the functional consequences of both coding and non-coding single nucleotide variants (SNVs)☆19Updated 3 years ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆15Updated 8 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- A web wrapper for GeneValidator☆11Updated 3 years ago
- a wee tool for random access into BGZF files.☆83Updated 6 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 3 years ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- ☆29Updated this week
- utilities for indexing and sequence extraction from FASTA files☆58Updated 3 years ago