Alternatives and similar repositories for docker-benchmarks

Users that are interested in docker-benchmarks are comparing it to the libraries listed below

• cbcrg / piper-nf
  RNA mapping pipeline
  ☆18Updated 7 years ago
• pcingola / BigDataScript
  BigDataScript: Scirpting language for big data
  ☆92Updated 4 years ago
• adarob / eXpress
  Streaming fragment assignment and quantification for high-throughput sequencing.
  ☆36Updated 5 years ago
• MG-RAST / AWE
  workflow and resource management system for bioinformatics data analysis
  ☆69Updated 4 years ago
• BauerLab / ngsane
  Analysis Framework for Biological Data from High Throughput Experiments
  ☆34Updated 9 years ago
• KHP-Informatics / bioindocker15
  [Bio in Docker] Symposium 2015
  ☆21Updated 8 years ago
• common-workflow-library / legacy
  Deprecated
  ☆100Updated 6 years ago
• wurmlab / oswitch
  Provides access to complex Bioinformatics software (even BioLinux!) in just one command.
  ☆76Updated 8 years ago
• wanpinglee / MOSAIK
  reference-guided aligner for next-generation sequencing technologies
  ☆56Updated 9 years ago
• rabix / rabix
  [Historical] Reproducible Analyses for Bioinformatics
  ☆106Updated 6 years ago
• OpenGene / OpenGene.jl
  (No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
  ☆66Updated 3 years ago
• mitre / fusera
  A FUSE interface to the NCBI Sequence Read Archive (SRA)
  ☆30Updated 5 years ago
• intel / workflow-profiler
  ☆20Updated 10 years ago
• ncbi / ngs
  NGS Language Bindings
  ☆118Updated last year
• bcbio / bcbio-nextgen-vm
  Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
  ☆67Updated 5 years ago
• pcingola / SnpSift
  ☆38Updated 8 months ago
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆60Updated 7 years ago
• galaxyproject / pulsar
  Distributed job execution application built for Galaxy
  ☆39Updated last week
• genome / genome
  Core modules used by the GMS
  ☆66Updated last year
• PriceLab / snapr
  SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis
  ☆25Updated 10 years ago
• sjackman / docker-linuxbrew
  Defunct. Use https://github.com/Linuxbrew/docker
  ☆14Updated 9 years ago
• broadinstitute / gamgee
  A C++14 library for NGS data formats
  ☆39Updated 6 years ago
• pachterlab / kallisto_paper_analysis
  Analysis from kallisto paper
  ☆32Updated 9 years ago
• ga4gh / tool-registry-service-schemas
  APIs for discovering genomics tools, their metadata and their containers
  ☆31Updated last month
• shenwei356 / gtaxon
  gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…
  ☆15Updated 9 years ago
• ncbi / sratoolkit
  SRAToolkit has been REPLACED - see README
  ☆37Updated 9 years ago
• ssadedin / bpipe
  Bpipe - a tool for running and managing bioinformatics pipelines
  ☆239Updated last week
• bioperl / bioperl.github.io
  The BioPerl Web site: http://bioperl.org
  ☆14Updated 6 years ago
• BioContainers / mulled
  Mulled - Automatized Containerized Software Repository
  ☆66Updated last year
• genome-in-a-bottle / giab_FAQ
  This repository contains FAQs (Frequently Asked Questions) for genome in a bottle project
  ☆10Updated 7 years ago