Alternatives and similar repositories for docker-benchmarks

Users that are interested in docker-benchmarks are comparing it to the libraries listed below

• cbcrg / piper-nf
  RNA mapping pipeline
  ☆18Updated 7 years ago
• adarob / eXpress
  Streaming fragment assignment and quantification for high-throughput sequencing.
  ☆36Updated 5 years ago
• pcingola / BigDataScript
  BigDataScript: Scirpting language for big data
  ☆92Updated 4 years ago
• shenwei356 / gtaxon
  gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…
  ☆15Updated 9 years ago
• wanpinglee / MOSAIK
  reference-guided aligner for next-generation sequencing technologies
  ☆56Updated 8 years ago
• ncbi / ngs
  NGS Language Bindings
  ☆119Updated last year
• wurmlab / oswitch
  Provides access to complex Bioinformatics software (even BioLinux!) in just one command.
  ☆76Updated 8 years ago
• broadinstitute / gamgee
  A C++14 library for NGS data formats
  ☆39Updated 6 years ago
• wurmlab / genevalidatorapp
  A web wrapper for GeneValidator
  ☆11Updated 4 years ago
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆60Updated 6 years ago
• mitre / fusera
  A FUSE interface to the NCBI Sequence Read Archive (SRA)
  ☆30Updated 5 years ago
• KHP-Informatics / bioindocker15
  [Bio in Docker] Symposium 2015
  ☆21Updated 7 years ago
• ncbi / sratoolkit
  SRAToolkit has been REPLACED - see README
  ☆39Updated 9 years ago
• BauerLab / ngsane
  Analysis Framework for Biological Data from High Throughput Experiments
  ☆34Updated 9 years ago
• bioperl / bioperl.github.io
  The BioPerl Web site: http://bioperl.org
  ☆14Updated 6 years ago
• MelbourneGenomics / cpipe
  The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline
  ☆33Updated 7 years ago
• sebhtml / ray
  Ray -- Parallel genome assemblies for parallel DNA sequencing
  ☆67Updated 8 years ago
• common-workflow-library / legacy
  Deprecated
  ☆100Updated 6 years ago
• genome-in-a-bottle / giab_FAQ
  This repository contains FAQs (Frequently Asked Questions) for genome in a bottle project
  ☆10Updated 6 years ago
• bcbio / bcbio-nextgen-vm
  Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
  ☆67Updated 5 years ago
• wegene-llc / radmixture
  an R package for ancestry analysis
  ☆37Updated 6 years ago
• pcingola / SnpSift
  ☆38Updated 7 months ago
• poreathon / poreathon
  Pipeline for poreathon
  ☆14Updated 10 years ago
• samtools / tabix
  Note: tabix and bgzip binaries are now part of the HTSlib project.
  ☆91Updated 4 years ago
• attractivechaos / k8
  k8 Javascript shell
  ☆157Updated last year
• PriceLab / snapr
  SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis
  ☆25Updated 10 years ago
• indraniel / fqgrep
  An approximate sequence pattern matcher for FASTQ/FASTA files.
  ☆31Updated 9 years ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 8 years ago
• yvdriess / precipes
  Parallel Recipes : parallel workflow execution made easy
  ☆13Updated 10 years ago
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago