Fast and Interpretable Protein Substructure Alignment via Optimal Transport (ICLR 2026)
☆27Jun 26, 2026Updated 2 months ago
Alternatives and similar repositories for PLASMA-Protein-Local-Alignment
Users that are interested in PLASMA-Protein-Local-Alignment are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Metadiffusion implemented in Boltz-2☆24Feb 23, 2026Updated 6 months ago
- ☆36Jul 7, 2026Updated 2 months ago
- ☆15Mar 5, 2026Updated 6 months ago
- The pytorch code of TDFold☆21Feb 25, 2026Updated 6 months ago
- ☆35Mar 2, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 🧬 Large-scale protein functional residue or fragment prediction benchmark. (ICLR 2026)☆24Apr 10, 2026Updated 5 months ago
- Generate intrinsically disordered peptide conformations via machine learning☆26May 26, 2024Updated 2 years ago
- ☆19Apr 13, 2026Updated 5 months ago
- ☆41Jun 17, 2025Updated last year
- Fast indexing and search of discontinuous motifs in protein structures☆216Jul 10, 2026Updated 2 months ago
- Cython implementation of PDB -> DataFrame parsing☆34May 23, 2026Updated 3 months ago
- AlphaFast: ultra-high-throughput AlphaFold3 inference with MMSeqs2-GPU☆167May 4, 2026Updated 4 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆155Apr 16, 2025Updated last year
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆17May 4, 2026Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- a lightweight distogram-prediction model trained via contrastive learning☆15May 3, 2026Updated 4 months ago
- ☆61May 29, 2025Updated last year
- code for SeqDance/ESMDance, biophysics-informed protein language models☆63Jan 28, 2026Updated 7 months ago
- The gmx_rrcs script is designed to calculate the residues-residues contact scores (rrcs) from a trajectory file generated by GROMACS.☆18Jun 16, 2025Updated last year
- The LoCoHD metric for protein-protein structure comparison☆15Oct 1, 2025Updated 11 months ago
- Protein Language Modeling beyond static folds reveals sequence-encoded flexibility☆37Feb 1, 2026Updated 7 months ago
- ☆40Sep 17, 2024Updated 2 years ago
- PocketMaster is a flexible and automated tool for analyzing, clustering, and visualizing protein binding sites. It allows you to quickly …☆19Feb 22, 2026Updated 6 months ago
- Folding-Docking-Affinity framework for protein-ligand affinity prediction☆31Mar 20, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The official code repository of "OmniESI: A unified framework for enzyme-substrate interaction prediction with progressive conditional de…☆33Aug 26, 2025Updated last year
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- ☆12Nov 22, 2024Updated last year
- DynamicGT: a dynamic-aware geometric transformer model to predict protein binding interfaces in flexible and disordered regions☆17Jun 18, 2026Updated 3 months ago
- Adaptive tokenization for proteins☆22Mar 4, 2026Updated 6 months ago
- Pocket Detection part of "Drug The Whole Genome" project☆17Feb 3, 2026Updated 7 months ago
- Toolkit for structure-based deep learning on RNA.☆46Sep 4, 2026Updated 2 weeks ago
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆18May 15, 2026Updated 4 months ago
- Modelling protein conformations with Alphafold3☆17Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Local homology search powered by ESM-2 language model, foldseek, hhsuite, and hmmer.☆18Jan 14, 2025Updated last year
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆46Aug 5, 2025Updated last year
- Structural Quality Assessment for Biomolecular Structure Prediction Models☆100Aug 7, 2026Updated last month
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆84May 1, 2026Updated 4 months ago
- The GB99dms implicit solvent force field for proteins, plus scripts and data☆27Sep 19, 2025Updated last year
- Versatile Embedding Network for Understanding protein Sequences☆26May 16, 2025Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆85Oct 24, 2025Updated 10 months ago