SouradiptoC / CodonULinks
A python project for analysis of codon usage for gene or genome analysis
☆25Updated last year
Alternatives and similar repositories for CodonU
Users that are interested in CodonU are comparing it to the libraries listed below
Sorting:
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 8 months ago
- A richly featured desktop platform for data analysis of bioinformatics. Especially, for quick sequence annotation and mutation analysis o…☆34Updated last year
- UniProt Id Mapping through API☆36Updated 4 months ago
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆16Updated last month
- Software for predicting translation initiation rates in bacteria☆31Updated 6 months ago
- Associated code for EvoWeaver publication☆16Updated 8 months ago
- Machine-learning-based general bacterial promoter prediction tool.☆53Updated 2 years ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆95Updated 6 months ago
- ORFFinder in Python☆15Updated last year
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆24Updated 3 years ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆67Updated 10 months ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated 4 months ago
- Programs used in the lab for various tasks☆13Updated 2 years ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆25Updated 2 years ago
- A simple command-line tool to download data from Joint Genome Institute databases☆51Updated 3 years ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Updated 5 years ago
- Discovery of conserved gene clusters in multiple genomes☆125Updated 3 weeks ago
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆34Updated last year
- ☆20Updated 3 years ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Updated 3 years ago
- ☆39Updated 2 years ago
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆106Updated last year
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆23Updated last month
- Pipeline for major biological analyses.☆36Updated 3 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 4 months ago
- BGC Detection and Classification Using Deep Learning☆156Updated 2 years ago
- Influenza genome analysis Nextflow workflow☆31Updated 4 months ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Updated 3 years ago
- Multiple sequence aligner for protein and DNA/RNA.☆22Updated 8 years ago
- sensitive and precise assembly of short sequencing reads☆162Updated last year