A python project for analysis of codon usage for gene or genome analysis
☆27Nov 10, 2024Updated last year
Alternatives and similar repositories for CodonU
Users that are interested in CodonU are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago
- A small program that glues together other programs allowing a user to input a codon alignment in FASTA format and produce an annotated ph…☆18Jan 14, 2015Updated 11 years ago
- A collection of M models downloaded from published studies☆17Feb 18, 2016Updated 10 years ago
- Umbrella documentation project for Nextstrain☆18Updated this week
- Bayesian molecular clock dating tutorial with genome-scale datasets☆19Dec 4, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- MayaChemTools is a growing collection of Perl and Python scripts, modules, and classes to support a variety of day-to-day computational d…☆10Sep 1, 2020Updated 5 years ago
- ☆17Dec 5, 2017Updated 8 years ago
- ☆12Dec 2, 2024Updated last year
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆37Apr 24, 2025Updated last year
- Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data☆12Jun 30, 2022Updated 4 years ago
- Assessing the quality of prokaryotic genomes, filtering and dereplication☆11Aug 26, 2022Updated 3 years ago
- Conversion software tool for producing both annotation and tree files for GraPhlAn☆11Feb 2, 2022Updated 4 years ago
- FastViromeExplorer project. Forked from https://code.vt.edu/saima5/FastViromeExplorer☆15Jul 2, 2019Updated 7 years ago
- A R tool to parse and visualize chloroplast genomes☆12Dec 1, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination☆15Jun 17, 2026Updated 3 weeks ago
- A pipeline to identify gene family using mutiple tools and scripts.☆11Aug 22, 2021Updated 4 years ago
- ☆14Sep 14, 2021Updated 4 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- Exploring the "dusk matter" of the RNA virosphere☆39Mar 25, 2022Updated 4 years ago
- OpenAI 官方文档中文版☆16Mar 9, 2023Updated 3 years ago
- Activity From Virtual Screening Code Repository☆24Aug 30, 2017Updated 8 years ago
- ☆19Dec 16, 2024Updated last year
- ☆10Mar 6, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Pocket-Oriented Elaboration of Molecules: application to CDK8 inhibition☆14Dec 30, 2022Updated 3 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Source code and data files for manuscript titled "Pharmaceutical patent landscaping: A novel approach to understand patents from the drug…☆15Nov 27, 2023Updated 2 years ago
- chloroplast genome assembly using long reads data☆17Jul 8, 2025Updated last year
- Code for "IDL-PPBopt: A Strategy for Prediction and Optimization of Human Plasma Protein Binding of Compounds via an Interpretable Deep L…☆11Apr 1, 2023Updated 3 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47May 27, 2022Updated 4 years ago
- A tutorial for Metagenome-Atlas☆24Nov 24, 2023Updated 2 years ago
- GTDB => NCBI☆15Nov 14, 2024Updated last year
- High-quality circular representations of taxonomic and phylogenetic trees☆110Aug 7, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆21Dec 15, 2020Updated 5 years ago
- ☆18Feb 5, 2024Updated 2 years ago
- Use Openwrt to dial-up in case you have a NetKeeper client.☆13Jan 16, 2018Updated 8 years ago
- EasyCodeML: A visual tool for analysis of selection using CodeML☆85May 7, 2023Updated 3 years ago
- ☆34Feb 8, 2026Updated 5 months ago
- A clean and minimalist theme for Vuepress !☆16Jan 8, 2026Updated 6 months ago
- snakemake workflow for bulk RNA-seq workflow using STAR-edgeR☆13Jul 1, 2026Updated last week