A python project for analysis of codon usage for gene or genome analysis
☆25Nov 10, 2024Updated last year
Alternatives and similar repositories for CodonU
Users that are interested in CodonU are comparing it to the libraries listed below
Sorting:
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 5 years ago
- Data and workflow examples☆16Apr 9, 2018Updated 7 years ago
- A small program that glues together other programs allowing a user to input a codon alignment in FASTA format and produce an annotated ph…☆18Jan 14, 2015Updated 11 years ago
- Bayesian molecular clock dating tutorial with genome-scale datasets☆19Dec 4, 2021Updated 4 years ago
- Umbrella documentation project for Nextstrain☆18Updated this week
- An R package with toolkits for tong's friends☆11Mar 18, 2025Updated 11 months ago
- ☆16Aug 17, 2023Updated 2 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Dec 12, 2018Updated 7 years ago
- R package for studying phylogenetically-informed movements (Dellicour et al. 2016, Bioinformatics; Dellicour et al. 2026, Bioinformatics)☆37Mar 2, 2026Updated last week
- An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)☆14Updated this week
- Exploring the "dusk matter" of the RNA virosphere☆37Mar 25, 2022Updated 3 years ago
- Import script needed to build FluPRINT database from source☆11May 23, 2019Updated 6 years ago
- A richly featured desktop platform for data analysis of bioinformatics. Especially, for quick sequence annotation and mutation analysis o…☆34Nov 6, 2024Updated last year
- heatmap3 is an improved heatmap package. It is completely compatible with the original R function heatmap, and provides some more powerfu…☆10Sep 2, 2021Updated 4 years ago
- Flutrack platform gathers flu related tweets from the entire world, with searching tag, words that are influenza synonyms and flu symptom…☆13Apr 22, 2019Updated 6 years ago
- EasyCodeML: A visual tool for analysis of selection using CodeML☆83May 7, 2023Updated 2 years ago
- ☆13Sep 14, 2021Updated 4 years ago
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecula…☆11Feb 19, 2026Updated 2 weeks ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Lecture on viral phylodynamics☆11Oct 28, 2021Updated 4 years ago
- Postprocessing gadgets for output generated by RevBayes☆14Feb 22, 2026Updated 2 weeks ago
- Functions for statistical estimation with pooled or grouped binary data☆10Jan 5, 2024Updated 2 years ago
- Identification of viral RdRPs in single-cell RNA sequencing data☆13Jul 23, 2025Updated 7 months ago
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆12Feb 6, 2026Updated last month
- A package containing several useful R-functions for reading and plotting the results of Birth-Death Skyline (BDSKY) runs in BEAST2.☆12Nov 28, 2018Updated 7 years ago
- Issue tracker for the Open Targets Platform☆13Jul 8, 2025Updated 8 months ago
- Inferring spatiotemporal dynamics of H5N1 influenza from sequence data☆10Sep 6, 2013Updated 12 years ago
- Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations☆11Sep 18, 2025Updated 5 months ago
- Library and tool for annotating MAF files using Genome Nexus Webserver API☆11Feb 25, 2026Updated last week
- A R tool to parse and visualize chloroplast genomes☆12Dec 1, 2021Updated 4 years ago
- Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences☆10Feb 26, 2023Updated 3 years ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Oct 15, 2025Updated 4 months ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆12Sep 15, 2023Updated 2 years ago
- Collection of fragmentomic analysis scripts☆13Jul 3, 2024Updated last year
- A Mesa-based ABM library for epidemiological (SIR) modeling.☆13Apr 2, 2020Updated 5 years ago
- Datamonkey - Run state-of-the-art statistical models through the comfort of your browser☆10Updated this week
- Posterior Analysis of Coalescent Trees☆14Aug 6, 2015Updated 10 years ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 7 months ago