Stand alone fMRI software suite for layer-fMRI analyses.
☆108Mar 16, 2026Updated this week
Alternatives and similar repositories for LAYNII
Users that are interested in LAYNII are comparing it to the libraries listed below
Sorting:
- VB17 Sequence Protocols. A collection of pdfs of sequence protocols that where used in my publications. Mostly VASO, Multi-echo, SMS, 3D-…☆20Feb 24, 2026Updated 3 weeks ago
- Open copy of the CBS Tools software repository☆18Nov 17, 2025Updated 4 months ago
- Tools for mesh surface-based operations☆40Mar 3, 2025Updated last year
- Scripts to prepare MP2RAGE for Freesurfer☆34Oct 27, 2023Updated 2 years ago
- Processing tools for high-resolution neuroimaging☆73Dec 18, 2025Updated 3 months ago
- An MRI analysis toolbox, primarily for laminar analysis☆11Jan 23, 2020Updated 6 years ago
- Diffuse Cluster Estimation and Regression. A de-noising tool.☆19Aug 22, 2022Updated 3 years ago
- 3D MRI data exploration and segmentation tool.☆77Jul 6, 2023Updated 2 years ago
- MP2RAGE Scripts - T1 map correction & Background noise removal☆73Feb 13, 2026Updated last month
- Patch based denoising method, targeting fMRI thermal noise removal.☆25Dec 19, 2025Updated 3 months ago
- Matlab code for performing image reconstruction in MRI and performing the NORDIC denoising☆72May 28, 2025Updated 9 months ago
- A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners☆53May 12, 2025Updated 10 months ago
- niimath - a clone of fslmaths. Try the live demo:☆75Updated this week
- This does everything that I need. Layering, smoothing-within layers, layer-connectivity, RF-coil,combination, 2D-dridding of layers and c…☆23Jan 16, 2026Updated 2 months ago
- Executables for ROMEO unwrapping for Linux, Windows and Mac OSX☆47May 27, 2025Updated 9 months ago
- BigBrainWarp☆27Jun 13, 2025Updated 9 months ago
- A lightweight Python library for reading & writing BrainVoyager file formats.☆27Mar 2, 2026Updated 2 weeks ago
- An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usag…☆13May 2, 2024Updated last year
- A list of brain imaging datasets with multiple scans per subject. Feel free to update the list via 'pull requests'!☆103Mar 12, 2025Updated last year
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆78Updated this week
- Python introduction for the PyBrain workshop at the MRC Cognition and Brain Sciences Unit☆12Nov 3, 2020Updated 5 years ago
- Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain☆351Jan 28, 2026Updated last month
- Official AFNI source and documentation☆186Updated this week
- A toolbox for comparing brain maps☆320Apr 23, 2025Updated 10 months ago
- Flexible DICOM conversion into structured directory layouts☆275Jan 22, 2026Updated last month
- Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)☆162Updated this week
- Generate custom Docker and Singularity images, and minimize existing containers☆355Updated this week
- Gradient Unwarping in Python☆41Dec 23, 2024Updated last year
- Automatic BIDS architecture☆15Sep 2, 2024Updated last year
- Plot the boundaries of ROIs on a surface☆73Apr 8, 2025Updated 11 months ago
- Visualize and print volumetric brain data☆13Jun 20, 2024Updated last year
- ☆108Jul 23, 2017Updated 8 years ago
- TAPAS - Translational Algorithms for Psychiatry-Advancing Science☆245Jun 5, 2025Updated 9 months ago
- onavg is a cortical surface template that was created based on high-quality structural scans of 1,031 brains from OpenNeuro☆15Feb 8, 2024Updated 2 years ago
- Tools for laminar analysis of the cortical sheet in Python☆12Jul 23, 2019Updated 6 years ago
- EPTI (Echo Planar Time-resolved Imaging) raw-data processing, image reconstruction and data preprocessing.☆16Jun 1, 2025Updated 9 months ago
- rapidtide - a suite of programs for doing time lag correlation analysis on fMRI data☆91Updated this week
- developmental cortical propagation detection + analyses☆10Jan 16, 2023Updated 3 years ago
- Resting state HRF estimation from BOLD-fMRI signal☆40Mar 9, 2026Updated last week