INCF / neuroscience-data-structureLinks
Space for discussion of a standardized structure (directory layout + metadata) for experimental data in systems neuroscience, similar to the idea of BIDS in neuroimaging
☆22Updated 2 years ago
Alternatives and similar repositories for neuroscience-data-structure
Users that are interested in neuroscience-data-structure are comparing it to the libraries listed below
Sorting:
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆19Updated last month
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆63Updated this week
- NWB Explorer is a web application to visualise and analyse the content of NWB:N 2 files☆26Updated 3 weeks ago
- Browser-based NWB visualization and DANDI exploration☆59Updated 2 weeks ago
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆32Updated last year
- Rendering anatomical heatmaps with brainrender and matplotlib☆44Updated 2 weeks ago
- Interactive Python course for using the Neurodata Without Borders format☆15Updated 6 years ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆25Updated 2 years ago
- CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.☆12Updated last year
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF☆103Updated this week
- ☆52Updated last year
- Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.☆50Updated last month
- Collection of probe description for probeinterface☆16Updated 2 months ago
- ☆10Updated 2 years ago
- Tools for analyzing spiking data from single-neuron recodings.☆29Updated 2 weeks ago
- A open toolbox of several machine learning approaches for sharp-wave ripple detection☆30Updated last year
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆40Updated 6 months ago
- Functions to assess quality of spike sorting results☆34Updated 2 years ago
- Visualization of electrophysiological data from Elephant☆24Updated 10 months ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Code for Functional Mixed Models for Fiber Photometry☆13Updated last month
- A package to manage electrophysiology analysis.☆23Updated this week
- analysis tools for large-scale neural recordings☆15Updated 5 months ago
- IBL core shared libraries☆63Updated this week
- Discussions and suggestions of backwards incompatible changes to BIDS☆12Updated last year
- Open Neurophysiology Environment☆21Updated this week
- Pose estimation scripts to be run on the SWC HPC cluster☆12Updated last year
- Systems Neuroscience Computing in Python: user-friendly analysis of large-scale electrophysiology data☆53Updated 6 months ago
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆66Updated this week
- "Approaches to Study Neural Circuits" course☆66Updated 9 months ago