Alternatives and similar repositories for medkit:

Users that are interested in medkit are comparing it to the libraries listed below

• percevalw / metanno
  Annotator building tool for Jupyter
  ☆21Updated 11 months ago
• aphp / eds-scikit
  eds-scikit is a Python library providing tools to process and analyse OMOP data
  ☆38Updated 2 months ago
• aphp / edsnlp
  Modular, fast NLP framework, compatible with Pytorch and spaCy, offering tailored support for French clinical notes.
  ☆120Updated this week
• umcu / clinlp
  A Python library for performing NLP on clinical text written in Dutch
  ☆35Updated 3 months ago
• aphp / eds-pseudo
  EDS-Pseudo is a hybrid model for detecting personally identifying entities in clinical reports
  ☆52Updated 2 weeks ago
• medkit-lib / medkit
  Toolkit for a learning health system
  ☆18Updated last month
• hpi-dhc / xmen
  ✖️MEN - A Modular Toolkit for Cross-Lingual Medical Entity Normalization
  ☆25Updated last month
• curie-data-factory / health-data-metrics
  Health Data Metrics (HDM) a Data Quality assessment Application.
  ☆11Updated 2 years ago
• aphp / foldedtensor
  PyTorch extension for handling deeply nested sequences of variable length
  ☆10Updated 2 months ago
• aphp / Cohort360-Back-end
  Backend of the Cohort360 web app @ https://github.com/aphp/Cohort360-FrontEnd and the Administration Portal @ https://github.com/aphp/Coh…
  ☆4Updated last week
• InstitutNationalduCancer / OSIRIS
  ☆18Updated last year
• aphp / edspdf
  EDS-PDF is a generic, pure-Python framework for text extraction from PDF documents. It provides the machinery to use rule- or machine-lea…
  ☆44Updated last week
• OHNLP / MedTagger
  MedTagger is a light weight clinical NLP system built upon Apache UIMA.
  ☆64Updated 3 months ago
• OHDSI / MIMIC
  MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitt…
  ☆76Updated last week
• clinicalml / omop-learn
  Python package for machine learning for healthcare using a OMOP common data model
  ☆107Updated last year
• UMEssen / FHIR-PYrate
  FHIR-PYrate is a package that provides a high-level API to query FHIR Servers for bundles of resources and return the structured informat…
  ☆63Updated last month
• Medical-Event-Data-Standard / meds_etl
  A collection of ETLs from common data formats to Medical Event Data Standard
  ☆27Updated this week
• MIT-LCP / mimic-omop
  Mapping the MIMIC-III database to the OMOP schema
  ☆131Updated 11 months ago
• cumc-dbmi / cehrbert
  CEHR-BERT: Incorporating temporal information from structured EHR data to improve prediction tasks
  ☆32Updated this week
• BCHSI / philter-ucsf
  Open source clinical text de-identification
  ☆122Updated 6 months ago
• Medical-Event-Data-Standard / meds
  Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data
  ☆46Updated this week
• HPIMS / phe2vec
  Phe2vec: Automated Disease Phenotyping based on Unsupervised Embeddings from Electronic Health Records
  ☆24Updated 4 years ago
• OHNLP / MedTator
  A Serverless Text Annotation Tool for Corpus Development
  ☆56Updated this week
• clinicalml / prancer
  Platform enabling Rapid Annotation for Clinical Entity Recognition
  ☆50Updated 2 years ago
• reality / komenti
  Semantic query and text mining tool
  ☆22Updated last year
• OHDSI / Criteria2Query
  [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed agai…
  ☆64Updated 6 months ago
• i2b2-omop / i2o-transform
  PCORnet Ontology to OMOP - beta!
  ☆11Updated last year
• som-shahlab / ehr_ml
  Code for doing machine learning with various EHRs
  ☆21Updated last year
• clinical-ai / omop-etl
  ETL Tool for converting datasets to OMOP CDM
  ☆30Updated 2 years ago
• bionlplab / radtext
  Python Radiology Text Analysis System
  ☆13Updated last year