Alternatives and similar repositories for Automatic-Cell-Counter

Users that are interested in Automatic-Cell-Counter are comparing it to the libraries listed below

• LabTrivedi / MOrgAna
  ☆29Updated 4 months ago
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆50Updated last month
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆36Updated 10 months ago
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆77Updated last month
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆137Updated last week
• AllenCell / aics-ml-segmentation
  ☆32Updated 2 years ago
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆81Updated last year
• maweigert / neubias_academy_stardist
  ☆31Updated 4 years ago
• RMS-DAIM / Python-for-Bioimage-Analysis
  This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…
  ☆134Updated 5 years ago
• stardist / stardist-imagej
  StarDist plugin for ImageJ
  ☆30Updated 3 years ago
• segment-anything-models-java / SAMJ-IJ
  An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
  ☆67Updated this week
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆35Updated 2 years ago
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆170Updated last week
• jono-m / OrganoID
  ☆24Updated last year
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆56Updated 3 months ago
• hdeter / CellTracking
  Python and ImageJ scripts designed to track single cells and analyze fluorescence
  ☆15Updated 3 years ago
• BIOP / ijl-utilities-wrappers
  Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
  ☆37Updated last week
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆173Updated this week
• MontpellierRessourcesImagerie / imagej_macros_and_scripts
  ImageJ macros and scripts written at the imaging facility MRI
  ☆33Updated 3 weeks ago
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆69Updated 3 weeks ago
• ilastik / ilastik4ij
  ImageJ plugins to run ilastik workflows
  ☆25Updated 4 months ago
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆113Updated last week
• swetabiox / Bioimage-Analysis-Resources
  A collection of resources on bioimage analysis and related tools and techniques
  ☆13Updated 2 years ago
• ome / omero-iviewer
  An OMERO.web app allowing to view images
  ☆19Updated 2 weeks ago
• CellMigrationLab / CellTracksColab
  A platform for compiling, analyzing, and exploring tracking data
  ☆44Updated 2 months ago
• bioimagebook / bioimagebook.github.io
  An introduction to bioimage analysis - http://bioimagebook.github.io
  ☆68Updated 10 months ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆85Updated last week
• peng-lab / BaSiCPy
  ☆81Updated 2 months ago
• BIOP / qupath-groovy-python-runner
  A proof of concept to run python segmentations and recovering the results within QuPath
  ☆19Updated 4 years ago
• ksugar / qupath-extension-cellsparse
  QuPath extension for Cellsparse
  ☆18Updated last month