HelmholtzAI-Consultants-Munich / Automatic-Cell-Counter
A GUI based on napari for counting cells automatically in cell migration experiments
☆45Updated 2 years ago
Alternatives and similar repositories for Automatic-Cell-Counter:
Users that are interested in Automatic-Cell-Counter are comparing it to the libraries listed below
- ☆25Updated this week
- Python and ImageJ scripts designed to track single cells and analyze fluorescence☆15Updated 3 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆129Updated 4 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 3 months ago
- ☆30Updated 3 years ago
- 3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehen…☆11Updated 2 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆133Updated 4 years ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆97Updated last year
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆55Updated 3 years ago
- Open source Python library for building bioimage analysis pipelines☆132Updated this week
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆67Updated 4 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆54Updated 2 years ago
- StarDist plugin for ImageJ☆27Updated 2 years ago
- Deconvolution of widefield microscopy images and generation of point spread functions☆45Updated this week
- 3D virtual staining with 2D and 2.5D U-Nets☆27Updated last year
- ImageJ macros and scripts written at the imaging facility MRI☆32Updated last week
- Toolbox for the analysis of smFISH images.☆58Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆49Updated last week
- CellProfiler tutorial pipelines and images☆86Updated 3 months ago
- Generate markdown notebooks from ImageJ Macro☆24Updated 3 years ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆23Updated 3 years ago
- ☆24Updated last week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated last month
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆143Updated this week
- ☆23Updated last year
- Lectures for a napari training course☆50Updated last year
- An introduction to bioimage analysis - http://bioimagebook.github.io☆65Updated 6 months ago
- ☆31Updated 2 years ago
- A napari plugin for itk-elastix☆38Updated 7 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆134Updated 2 months ago