HelmholtzAI-Consultants-Munich / Automatic-Cell-CounterLinks
A GUI based on napari for counting cells automatically in cell migration experiments
☆46Updated 3 years ago
Alternatives and similar repositories for Automatic-Cell-Counter
Users that are interested in Automatic-Cell-Counter are comparing it to the libraries listed below
Sorting:
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆99Updated 2 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆152Updated 3 months ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆136Updated 5 years ago
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆189Updated this week
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆135Updated last month
- ☆32Updated 11 months ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆232Updated 2 years ago
- Open source Python library for building bioimage analysis pipelines☆187Updated last week
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆123Updated this week
- Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…☆158Updated last month
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- CellProfiler tutorial pipelines and images☆98Updated 2 months ago
- A python algorithm for tracking cells in 3D deforming organs☆66Updated last month
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆160Updated 5 months ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆220Updated last month
- An introduction to deepcell and deep learning☆155Updated last year
- ☆91Updated 2 months ago
- An introduction to bioimage analysis - http://bioimagebook.github.io☆76Updated 4 months ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆63Updated 2 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- Python and ImageJ scripts designed to track single cells and analyze fluorescence☆15Updated 4 years ago
- ☆31Updated 4 years ago
- ImageJ macros and scripts written at the imaging facility MRI☆37Updated 3 weeks ago
- Deconvolution of widefield microscopy images and generation of point spread functions☆58Updated this week
- Cloud-based data annotation tools for biological images☆84Updated last year
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆85Updated this week
- Read and write life sciences file formats☆142Updated 7 months ago
- Raw format to OME-TIFF converter☆56Updated last month
- Lectures for a napari training course☆50Updated 2 years ago
- ☆31Updated 2 months ago