HelmholtzAI-Consultants-Munich / Automatic-Cell-Counter
A GUI based on napari for counting cells automatically in cell migration experiments
☆46Updated 2 years ago
Alternatives and similar repositories for Automatic-Cell-Counter:
Users that are interested in Automatic-Cell-Counter are comparing it to the libraries listed below
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆129Updated last week
- StarDist plugin for ImageJ☆27Updated 2 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 4 months ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆97Updated 2 years ago
- Python and ImageJ scripts designed to track single cells and analyze fluorescence☆15Updated 3 years ago
- Accelerated Pixel and Object Classifiers (APOC)☆54Updated 2 years ago
- ☆25Updated 3 weeks ago
- ☆68Updated 2 months ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆133Updated 4 years ago
- ImageJ macros and scripts written at the imaging facility MRI☆32Updated this week
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Cloud-based data annotation tools for biological images☆77Updated last year
- Multiple file format reading directly into napari using pure Python☆35Updated 6 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆73Updated 2 weeks ago
- 3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehen…☆11Updated 2 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆51Updated 3 months ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆106Updated 2 weeks ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆67Updated 5 months ago
- ☆31Updated 2 years ago
- Lectures for a napari training course☆50Updated last year
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆58Updated this week
- SplineDist: Automated Cell Segmentation with Spline Curves☆65Updated 4 months ago
- StarDist plugin for napari☆37Updated 5 months ago
- Open source Python library for building bioimage analysis pipelines☆136Updated this week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- ☆22Updated 11 months ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- An introduction to deepcell and deep learning☆144Updated 3 months ago
- Tool for segmentation in bioimaging☆31Updated this week
- Track and lineage visualization with btrack and Napari☆45Updated 3 months ago