Alternatives and similar repositories for Automatic-Cell-Counter:

Users that are interested in Automatic-Cell-Counter are comparing it to the libraries listed below

• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆129Updated last week
• stardist / stardist-imagej
  StarDist plugin for ImageJ
  ☆27Updated 2 years ago
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆50Updated 4 months ago
• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆97Updated 2 years ago
• hdeter / CellTracking
  Python and ImageJ scripts designed to track single cells and analyze fluorescence
  ☆15Updated 3 years ago
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆54Updated 2 years ago
• LabTrivedi / MOrgAna
  ☆25Updated 3 weeks ago
• peng-lab / BaSiCPy
  ☆68Updated 2 months ago
• RMS-DAIM / Python-for-Bioimage-Analysis
  This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…
  ☆133Updated 4 years ago
• MontpellierRessourcesImagerie / imagej_macros_and_scripts
  ImageJ macros and scripts written at the imaging facility MRI
  ☆32Updated this week
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆77Updated last year
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆35Updated 6 months ago
• HenriquesLab / DL4MicEverywhere
  Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images
  ☆73Updated 2 weeks ago
• tpecot / DeepLearningBasedSegmentationForBiologists
  3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehen…
  ☆11Updated 2 years ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆51Updated 3 months ago
• kreshuklab / plant-seg
  A tool for cell instance aware segmentation in densely packed 3D volumetric images
  ☆106Updated 2 weeks ago
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆67Updated 5 months ago
• AllenCell / aics-ml-segmentation
  ☆31Updated 2 years ago
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• bioimage-io / bioimage.io
  Website for the BioImage Model zoo -- a model zoo for bioimage analysis.
  ☆58Updated this week
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆65Updated 4 months ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆37Updated 5 months ago
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆136Updated this week
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆43Updated last year
• baigouy / EPySeg
  ☆22Updated 11 months ago
• fmi-basel / LSTree
  LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.
  ☆18Updated last year
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆144Updated 3 months ago
• 4DNucleome / PartSeg
  Tool for segmentation in bioimaging
  ☆31Updated this week
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 3 months ago