CharlesHahn / DuIvyToolsLinks
A Tool to process and visualize the results of molecular dynamics simulations(GROMACS).
☆92Updated 3 months ago
Alternatives and similar repositories for DuIvyTools
Users that are interested in DuIvyTools are comparing it to the libraries listed below
Sorting:
- some scripts for analysis of MD and CADD. And some tutorials.☆61Updated last year
- Scripts for virtual screening, cross docking and protein relax using Schrödinegr and Rosetta☆85Updated 10 months ago
- CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses☆60Updated 6 months ago
- Deep Site and Docking Pose (DSDP) is a blind docking strategy accelerated by GPUs, developed by Gao Group. For the site prediction part, …☆63Updated 7 months ago
- A PyMOL Plugin for calculating docking box for LeDock, AutoDock and AutoDock Vina.☆117Updated 6 years ago
- binding free energy estimator 2☆137Updated 3 weeks ago
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆204Updated 2 years ago
- A universal structure-directed lead optimization☆70Updated last week
- Vina-GPU 2.0 accelerates AutoDock Vina and its related commonly derived docking methods, such as QuickVina 2 and QuickVina-W with GPUs.☆115Updated 2 years ago
- An automatic workflow to perform MM/GB(PB)SA calculations from force field building, and structure optimization to free energy calculatio…☆128Updated 3 weeks ago
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆31Updated last week
- Easy to get started with molecular dynamics simulation.☆62Updated 8 months ago
- Interface to OpenMM for easy setup of molecular dynamic simulations of protein-ligand complexes☆162Updated last week
- tools for GROMACS☆139Updated 7 months ago
- Automatic gromacs protocol from preparation to production with ligand parametrization through☆79Updated 10 months ago
- Python3 translation of AutoDockTools☆132Updated last year
- A Consensus Docking Plugin for PyMOL☆79Updated last year
- AutoDock CrankPep for peptide and disordered protein docking☆57Updated 3 months ago
- Official repo of "CarsiDock: a deep learning paradigm for accurate protein–ligand docking and screening based on large-scale pre-training…☆111Updated 5 months ago
- Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation☆138Updated 2 years ago
- Molecular Dynamics for Experimentalists☆65Updated 2 months ago
- (Windows) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina☆68Updated 3 years ago
- DynamiSpectra: Decode molecular motion with precision and power☆20Updated 4 months ago
- DockStream: A Docking Wrapper to Enhance De Novo Molecular Design☆129Updated 2 years ago
- Python scripts to convert CGenFF stream files to GROMACS format☆45Updated 2 months ago
- ☆132Updated last year
- ☆40Updated last year
- Simple protein-ligand complex simulation with OpenMM☆91Updated 2 years ago
- Trusted force field files for gromacs☆68Updated last year
- PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.☆166Updated 2 months ago