CharlesHahn / DuIvyTools
A Tool to process and visualize the results of molecular dynamics simulations(GROMACS).
☆62Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for DuIvyTools
- some scripts for analysis of MD and CADD. And some tutorials.☆52Updated 3 months ago
- binding free energy estimator 2☆108Updated 2 weeks ago
- An automatic workflow to perform MM/GB(PB)SA calculations from force field building, and structure optimization to free energy calculatio…☆95Updated 2 weeks ago
- ☆39Updated 4 months ago
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆74Updated last year
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆165Updated last year
- Easy to get started with molecular dynamics simulation.☆39Updated last week
- Tutorial on the setup and simulation of a membrane protein with AMBER Lipid21 and PACKMOL-Memgen☆53Updated last year
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆13Updated this week
- Deep Site and Docking Pose (DSDP) is a blind docking strategy accelerated by GPUs, developed by Gao Group. For the site prediction part, …☆51Updated 3 weeks ago
- (Windows) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina☆61Updated 2 years ago
- Trusted force field files for gromacs☆40Updated 3 weeks ago
- CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses☆36Updated 2 months ago
- Toolkit for free-energy calculation setup/analysis and biomolecular structure handling☆137Updated 3 months ago
- tools for GROMACS☆98Updated last month
- Simple protein-ligand complex simulation with OpenMM☆73Updated last year
- Scripts for virtual screening, cross docking and protein relax using Schrödinegr and Rosetta☆59Updated last month
- (Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina☆66Updated last year
- Open Source, Automated free binding free energy calculation between protein and small molecule. An all-in-one workflow, free energy pertu…☆49Updated 3 months ago
- A python toolkit for analysing membrane protein-lipid interactions.☆60Updated last year
- The Free Energy Landscape Analysis tool offers a comprehensive suite for analyzing and visualizing the free energy landscape derived from…☆16Updated last month
- DockStream: A Docking Wrapper to Enhance De Novo Molecular Design☆108Updated last year
- pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…☆63Updated last year
- rDock is a fast and versatile Open Source docking program that can be used to dock small molecules against proteins and nucleic acids. It…☆51Updated this week
- ☆13Updated last year
- gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.☆229Updated 3 weeks ago
- AI-powered Virtual Screening☆83Updated last year
- Interface for AutoDock, molecule parameterization☆205Updated this week
- ☆75Updated 2 years ago
- Automatic gromacs protocol from preparation to production with ligand parametrization through☆59Updated last month