CharlesHahn / DuIvyTools
A Tool to process and visualize the results of molecular dynamics simulations(GROMACS).
☆73Updated 9 months ago
Alternatives and similar repositories for DuIvyTools
Users that are interested in DuIvyTools are comparing it to the libraries listed below
Sorting:
- some scripts for analysis of MD and CADD. And some tutorials.☆54Updated 9 months ago
- binding free energy estimator 2☆115Updated 2 weeks ago
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆188Updated last year
- Toolkit for free-energy calculation setup/analysis and biomolecular structure handling☆144Updated 2 weeks ago
- Tutorial on the setup and simulation of a membrane protein with AMBER Lipid21 and PACKMOL-Memgen☆63Updated last year
- An automatic workflow to perform MM/GB(PB)SA calculations from force field building, and structure optimization to free energy calculatio…☆108Updated 6 months ago
- Interface to OpenMM for easy setup of molecular dynamic simulations of protein-ligand complexes☆128Updated last week
- Deep Site and Docking Pose (DSDP) is a blind docking strategy accelerated by GPUs, developed by Gao Group. For the site prediction part, …☆57Updated 6 months ago
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆23Updated this week
- DockStream: A Docking Wrapper to Enhance De Novo Molecular Design☆116Updated 2 years ago
- CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses☆44Updated 4 months ago
- Easy to get started with molecular dynamics simulation.☆55Updated this week
- ☆39Updated 10 months ago
- (Windows) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina☆64Updated 2 years ago
- Trusted force field files for gromacs☆47Updated 6 months ago
- This repository contains notebooks for the workshop Python for Cheminformatics-Driven Molecular Docking held on May 1, 2025 in collaborat…☆65Updated last week
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆76Updated last year
- tools for GROMACS☆111Updated last week
- A Consensus Docking Plugin for PyMOL☆72Updated 11 months ago
- A python toolkit for analysing membrane protein-lipid interactions.☆63Updated 2 years ago
- Python3 translation of AutoDockTools☆114Updated 11 months ago
- Simple protein-ligand complex simulation with OpenMM☆84Updated last year
- Scripts for virtual screening, cross docking and protein relax using Schrödinegr and Rosetta☆76Updated last month
- ☆17Updated last year
- ☆76Updated 3 years ago
- a Python library and CLI for the molecular dynamics simulation package Q☆20Updated last year
- (Linux and macOS) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina☆68Updated last year
- Automatic gromacs protocol from preparation to production with ligand parametrization through☆68Updated last month
- Incorporation of conformational space profile into molecular representation learning, and its application to drug discovery, including vi…☆50Updated last month
- ☆112Updated 9 months ago