CharlesHahn / DuIvyToolsLinks
A Tool to process and visualize the results of molecular dynamics simulations(GROMACS).
☆83Updated this week
Alternatives and similar repositories for DuIvyTools
Users that are interested in DuIvyTools are comparing it to the libraries listed below
Sorting:
- some scripts for analysis of MD and CADD. And some tutorials.☆61Updated last year
- binding free energy estimator 2☆131Updated last month
- PyAutoFEP: an automated FEP workflow for GROMACS integrating enhanced sampling methods☆194Updated 2 years ago
- Scripts for virtual screening, cross docking and protein relax using Schrödinegr and Rosetta☆81Updated 6 months ago
- An automatic workflow to perform MM/GB(PB)SA calculations from force field building, and structure optimization to free energy calculatio…☆120Updated 11 months ago
- Vina-GPU 2.0 accelerates AutoDock Vina and its related commonly derived docking methods, such as QuickVina 2 and QuickVina-W with GPUs.☆112Updated 2 years ago
- CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses☆52Updated 2 months ago
- Deep Site and Docking Pose (DSDP) is a blind docking strategy accelerated by GPUs, developed by Gao Group. For the site prediction part, …☆63Updated 4 months ago
- Python3 translation of AutoDockTools☆129Updated last year
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆29Updated this week
- A PyMOL Plugin for calculating docking box for LeDock, AutoDock and AutoDock Vina.☆104Updated 6 years ago
- PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.☆156Updated 7 months ago
- A Consensus Docking Plugin for PyMOL☆76Updated last year
- Easy to get started with molecular dynamics simulation.☆62Updated 4 months ago
- Interface to OpenMM for easy setup of molecular dynamic simulations of protein-ligand complexes☆151Updated last week
- tools for GROMACS☆126Updated 3 months ago
- ☆78Updated 3 years ago
- Official repo of "CarsiDock: a deep learning paradigm for accurate protein–ligand docking and screening based on large-scale pre-training…☆101Updated 2 months ago
- AutoDock CrankPep for peptide and disordered protein docking☆51Updated 4 years ago
- A universal structure-directed lead optimization☆56Updated 7 months ago
- implicit or explicit water model based docking with Autodock vina engine. supporting pharmacophore /position constrained docking☆69Updated 7 months ago
- A pocket volume analyzer for use in protein modeling.☆56Updated 3 years ago
- Automatic gromacs protocol from preparation to production with ligand parametrization through☆74Updated 6 months ago
- (Windows) AMDock: Assisted molecular docking with AutoDock4 and AutoDockVina☆67Updated 3 years ago
- Trusted force field files for gromacs☆61Updated last year
- Calculation of interatomic interactions in molecular structures☆81Updated 3 years ago
- Toolkit for free-energy calculation setup/analysis and biomolecular structure handling☆160Updated 2 months ago
- Vina-GPU 2.1, an improved docking toolkit for faster speed and higher accuracy on the virtual screening☆126Updated last year
- ☆131Updated 6 years ago
- DockStream: A Docking Wrapper to Enhance De Novo Molecular Design☆125Updated 2 years ago