Code to facilitate translation of QuPath annotations to LMD compatible contours
☆14Oct 29, 2026Updated this week
Alternatives and similar repositories for Qupath_to_LMD
Users that are interested in Qupath_to_LMD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Facilitating the use of Deep Visual Proteomics☆23Oct 26, 2026Updated last week
- Read, create and write cutting data for the Leica LMD6 & LMD7 microscope. Build reproducible workflows to calibrate, import SVG files and…☆16Oct 16, 2026Updated 2 weeks ago
- Fast FASTA indexing, extraction, validation, and stats in a few MB of memory for any file size. One static binary and a Zig package; hand…☆16Oct 15, 2026Updated 2 weeks ago
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated 2 years ago
- LIMPA DAVIS Proteomics Pipeline☆22Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A pipeline to transform images into valuable analysis items☆19Sep 21, 2026Updated last month
- Predicting cell cycle stage from 3D single-cell nuclear-stained images☆11Jun 2, 2025Updated last year
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 3 years ago
- A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.☆43Oct 19, 2026Updated 2 weeks ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Sep 11, 2021Updated 5 years ago
- Code package that allows meta analyses of unsupervised behavior results☆23Jun 5, 2025Updated last year
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated 7 months ago
- The Git Account of LCMSMethods.org☆11Jun 1, 2019Updated 7 years ago
- Extract surfaces from 3D microscopy images and project them to 2D for analysis and visualization☆12Jul 17, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Deep Learning for Kidney Histologic Primitives (U-Net implementation in PyTorch)☆11Jan 13, 2021Updated 5 years ago
- PIPredictor: predicting who becomes a principal investigator (PI)☆11Apr 2, 2014Updated 12 years ago
- Search- and quantification-engine agnostic biological interpretation of proteomics data☆43Updated this week
- ☆12Apr 9, 2018Updated 8 years ago
- Omics Data Discovery Agents☆18Jul 20, 2026Updated 3 months ago
- A library for Raman spectroscopy harmonization☆11Updated this week
- Game code of python☆10Jun 24, 2025Updated last year
- ☆20Jun 5, 2026Updated 4 months ago
- Single Cell Proteomics Data☆13Oct 2, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Ease transition between napari and vedo☆12Jun 13, 2025Updated last year
- Solve bio-image analysis puzzles!☆13Apr 26, 2025Updated last year
- ☆13Feb 5, 2026Updated 8 months ago
- Batch processor of camera raw files supporting Adobe XMP profiles for film emulation☆19Sep 11, 2026Updated last month
- a streamlining post Spectronaut™ DIA-MS data analysis R package☆16Jun 1, 2026Updated 5 months ago
- Materials for the advanced image registration section of the "Advanced methods in bioimage analysis" EMBO 2023 course☆10Sep 15, 2023Updated 3 years ago
- Public landing page and releases for CellTune.☆12Jul 13, 2026Updated 3 months ago
- A simple automated feedback microscopy tool for live tracking of moving samples.☆15May 28, 2026Updated 5 months ago
- Analysis framework for morphological profiling data☆14Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆15Feb 5, 2025Updated last year
- Computational workflows to assess phototoxicity in live-cell microscopy experiments☆11Aug 11, 2026Updated 2 months ago
- Links between modalities in mudata☆17Oct 16, 2026Updated 2 weeks ago
- Spending less time on SDRF creates more time for amazing research☆10Oct 15, 2025Updated last year
- 🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data☆39Jun 10, 2024Updated 2 years ago
- A Python package and command-line interface for extracting knowledge graphs from text, with a special focus on supporting agents working …☆24Jan 13, 2026Updated 9 months ago
- snakemake workflow for bulk RNA-seq workflow using STAR-edgeR☆14Oct 13, 2026Updated 3 weeks ago